Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00224 ATGCAGCAAGATCAAGGCAAAAAGAATTCGACCGAAATGGAGTTTTTCTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATCGGTAAAGGAAGCTATGGGGTTGTGTGTTCTGCTATTGACACACGCACTGGCGACAAGGTTGCAATAAAGAAGATACACAATATTTTTGAGCATATATCTGATGCTGTTAGAATTCTTCGTGAGATTAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACATGTTATGCTGCCACCTTCACGGAGGGATTTCAAAGATATCTACGTTGTTTTTGAGCTGATGGAATCAGATCTTCACCAAGTTATTAAAGCTAATGATGATCTTACTCGAGAACATTACCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCTAATGTCTACCATCGAGATTTAAAACCAAAGAATATATTAGCAAATTCAAATTGTAAACTCAAAATATGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACGCCAACGACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACCGGGCTCCCGAGCTCTGTGGTTCATTTTTCTCTAAGTATACACCTGCAATTGATATATGGAGCATTGGCTGCATATTTGCTGAAGTTTTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTCGTTCACCAGCTTGATTTGATGACAGATCTCCTTGGAACTCCTTCACTAGATACAATCTCCAGGGTACGCAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCAGTGCCATTTGCTCAAAAGTTTCCGAACGCAGATCCTTTAGCGCTGAGACTTCTAGAAAGGTTGCTTGCTTTCGATCCAAAAGATAGGCCGACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCTCAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCGCAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCACCCTCAGCTACTAAAAGATTACATGAATGGGACTGAGAGGACAAATTTTCTATATCCAAGTGCTGTCGACCAATTTAGAAAGCAGTTTGCACATCTGGAGGAAAATGGTGATTTACCAATTCCCCGACCGTGTTTCACTTCAGCAGCCAAGCCTGGAAGAGTGGTTGGACCAGTAATAGCAGATGAGAATGGGAGGGTAGTGAAGGAACCATATGATCCAAGAACGTTGATCAGAGGAGCCATTCTTCCTCCTACATATCACTACCAAAAACCCATTGCTGGAAATCAAGAAAGATCTGCAGCAGAAACAAAACTGGATATTTCATTAAGAGCCACTAAGCAAGCATCCCAGTGTGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGCATCGACTCGAACCCTTTTTACATGACACGAGCAGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGACACGAACTTTCTGCAGGCCAAGGCGGCCCAATACAGTGGTCTGGGTACAGCAACGGCCACCACCACATCGGTCGCTCACAGAAAGGTGATTGCTGGTCAGTATAGCATGACGAAGATGTACTAG 1671 42.43 MQQDQGKKNSTEMEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPISKMEFEFERRRVAKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGDLPIPRPCFTSAAKPGRVVGPVIADENGRVVKEPYDPRTLIRGAILPPTYHYQKPIAGNQERSAAETKLDISLRATKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDTNFLQAKAAQYSGLGTATATTTSVAHRKVIAGQYSMTKMY 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1293519 1297842 - Carg03442-RA Car20g00224 168083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00224 556 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Car20g00224 556 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car20g00224 556 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00224 556 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01641 Car-Chr11:12935511 Car20g00224 Car-Chr20:1293519 0 wgd
Car19g00847 Car-Chr19:8898907 Car20g00224 Car-Chr20:1293519 0 wgd
Car02g00030 Car-Chr2:250886 Car20g00224 Car-Chr20:1293519 1.98E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89596 PF00069 Pkinase 5.60E-67 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00224 - - gmx:100815293 883.634