Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car20g00226 | ATGTCAAATAATGAAGATCGTGAGAAGGATCCTTATTACCCAAACTTTGAAGCTTTTGATCCTTCTAATGTGGGGTTTTACTCTGATTTCTTATATGATTACAACAACTTCCTCTCTACCGACATCGACATATCGTGTTCGTCGTCGGAAGCTATTTCTCCAATCAACGATGCTTTGAAGAAGTCGTTGGGTCTCAGAGAGTCGGTGGCGACCGGTGAGCATCCATCGACGCCGAATTCCTCGACTACGTGTTCGTCGGTCGAGGCGGCCGCCGGTGGTAGCGATTCAGCCAAGAGTGGGGAGGAGAAAAGAGAAAAAGGGCCAAGATTTGCGTTCTTGACCAAATCTGAAATTGATAACCTTGAAGATGGGTATAGATGGAGAAAATATGGGCAAAAAGCTGTAAAAAACAGCCCTTTTCCAAGAAGTTATTATAAATGCACGAGTCAAAATTGCAGTGTGAAAAAGAGAGTAGAAAGATCATCAGAAGATCCATGTTTTGTTGTAACAACGTACGAAGGGAAACACAACCACTACTGTCCGATTACACTTCGAGGGCACAATGTGGCCGGAGTTTATCCGCCGTCGGCTTCACCGTCGTTGATTCCGACGAGAATCTTGTCCGGCGAGTTCTATGGAGGGGTGGATCTGCAGCAACAATACTACGAGGTTCCTGGGTATGGGGTGTTGGAAGATCTGGTAAATCCAAAGCAAAACCCATGA | 723 | 45.5 | MSNNEDREKDPYYPNFEAFDPSNVGFYSDFLYDYNNFLSTDIDISCSSSEAISPINDALKKSLGLRESVATGEHPSTPNSSTTCSSVEAAAGGSDSAKSGEEKREKGPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPFPRSYYKCTSQNCSVKKRVERSSEDPCFVVTTYEGKHNHYCPITLRGHNVAGVYPPSASPSLIPTRILSGEFYGGVDLQQQYYEVPGYGVLEDLVNPKQNP | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1304429 | 1305598 | + | Carg03440-RA | Car20g00226 | 168085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car20g00226 | 240 | MobiDBLite | consensus disorder prediction | 67 | 107 | - | - | |
Car20g00226 | 240 | Pfam | WRKY DNA -binding domain | 122 | 178 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car20g00226 | 240 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
Car20g00226 | 240 | ProSiteProfiles | WRKY domain profile. | 116 | 181 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car19g00856 | Car20g00226 | CCT | |
Car19g00856 | Car20g00226 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car20g00226 | Car-Chr20:1304429 | Car06g01335 | Car-Chr6:9575672 | 5.13E-39 | dispersed | |
Car20g00952 | Car-Chr20:10954515 | Car20g00226 | Car-Chr20:1304429 | 1.05E-27 | dispersed | |
Car11g01645 | Car-Chr11:12951829 | Car20g00226 | Car-Chr20:1304429 | 2.90E-61 | wgd | |
Car19g00856 | Car-Chr19:8938314 | Car20g00226 | Car-Chr20:1304429 | 2.95E-61 | wgd | |
Car20g00226 | Car-Chr20:1304429 | Car03g01238 | Car-Chr3:9577419 | 3.10E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5339 | PF03106 | WRKY | 2.40E-25 | CL0274 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car20g00226 | - | - | cmos:111448234 | 469.544 |