Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00227 ATGGCGTCCGGGAACTCGTTGAATGATCATTTATCTAAGAAGACTTCATTCTGGGGCTTGTCATTGTGGGTTTTGATATGCATTTGCATTGGTGCATTCATAGTTTTGATTCTTGGTTTGTTATCCATCTGGATCCTGTTTCGAAAAAAATCTAAAAGATCCATGGACAAGCTCCCCATTTCCCAGATACCTAACTTTTCAAAAGATATCAGGATAGATCAGGTTGGGACTCAAATTCCCAATGATCACCCTGAAAATAGGCTTCTTTCTGTTAATGTCAAGAGAAATCTTGAACATTCTGAAGTTATGGCTGTCACGAAATCGAGTGAACCTGATAACAATAGCCAATGTAGTTCTACTTATCAACACGAAAAAGTTGGCAATTCACAATCTGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCGAGGTCGCATGGTGGATATGGAGGAATTGTGCCACCGTCTCCTCTCGTTGGCTTGCCAGAAATTTCGCATCTTGGGTGGGGTCACTGGTTCACTCTCAGGGATCTAGAGCTTGCTACGAATCGTTTTTCGACCGAGAATATTCTTGGGGAAGGAGGATATGGAGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGACATAAGAATCTCGTCCGACTGCTCGGTTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAGTATGTGAACAATGGTAATCTAGAACAGTGGCTACACGGAGCCATGAGCCAACACGGCACGTTTACTTGGGAGGCTCGCATGAGGGTGCTTCTTGGCACGGCTAAGGCGCTTGCCTATTTACACGAAGCAATCGAGCCGAAAGTTGTTCATAGAGATATCAAATCGAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTACGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTTGGCGTTCTCCTGCTAGAAGCAATTACCGGGAGGGACCCTGTGGACTATGCTCGTCCTTCTAATGAGGTTAATCTTGTCGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACACGAACCTTGAGACCAAGCCAACAACTCGTGCTTTAAAACGTGCCCTTCTTGTCGCACTTCGATGTATCGATCCAGAATCAATCAAGAGACCGAAGATGAGTCAAGTTGTACGAATGCTCGAAGCGGACGAATTTCCACTGCACGAGGATAGAAGGAACCGAAAAAGCCGATCAATAAGCTTGGAGATCGAGTCGATGAAAGAAATATCAGGTTCAGAAGCGACGGGTGGGCCATCGGAGAGCCATAAATCAGAGACAAACCATGGATAG 1524 44.62 MASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSIWILFRKKSKRSMDKLPISQIPNFSKDIRIDQVGTQIPNDHPENRLLSVNVKRNLEHSEVMAVTKSSEPDNNSQCSSTYQHEKVGNSQSGEEGSSGNARKQASRSHGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTFTWEARMRVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDTNLETKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGSEATGGPSESHKSETNHG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1307189 1310873 - Carg03439-RA Car20g00227 168086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00227 507 Coils Coil 207 227 - -
Car20g00227 507 MobiDBLite consensus disorder prediction 466 507 - -
Car20g00227 507 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00227 507 MobiDBLite consensus disorder prediction 104 153 - -
Car20g00227 507 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Car20g00227 507 MobiDBLite consensus disorder prediction 466 480 - -
Car20g00227 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Car20g00227 507 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00227 507 MobiDBLite consensus disorder prediction 104 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00858 Car20g00227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00148 Car-Chr5:745968 Car20g00227 Car-Chr20:1307189 0 dispersed
Car19g00506 Car-Chr19:6726105 Car20g00227 Car-Chr20:1307189 8.88E-153 dispersed
Car19g00858 Car-Chr19:8944370 Car20g00227 Car-Chr20:1307189 1.53E-164 dispersed
Car17g00370 Car-Chr17:2362437 Car20g00227 Car-Chr20:1307189 3.19E-98 transposed
Car11g01646 Car-Chr11:12954273 Car20g00227 Car-Chr20:1307189 0 wgd
Car19g00857 Car-Chr19:8942705 Car20g00227 Car-Chr20:1307189 7.30E-81 wgd
Car02g00029 Car-Chr2:243027 Car20g00227 Car-Chr20:1307189 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89597 PF00069 Pkinase 1.20E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00227 - - csv:101214087 934.865