Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00250 ATGACTATGATGGTCGCTGTAAGAGCAATCGCAGCCACAACAGCTCGATCAGTGGTGCGATCGACCAGGCTCCCTCTTCAATCTCCATCGCTATATGTGTTTGCTCAGCGGAAATCTCACTCCCACACGCTTCTCATTCGTCAGATGAGCTCCGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGCCAAGGCCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCGGATCGACGACTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGGCTGGTCCCCTTCATGAGTATTTGTGTTCAATTGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCGGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTCGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATGGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAGTCTGCAAGTTGGTGATGGTTTCGGTGAAGGTGTATCTCTGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCCAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCGGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCCTGGGGAACATGGGCAGCAACTAG 1665 45.77 MTMMVAVRAIAATTARSVVRSTRLPLQSPSLYVFAQRKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKEELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKAGPLHEYLCSIVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAMAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQSLQVGDGFGEGVSLGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMGSN 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1444254 1455687 + Carg03416-RA Car20g00250 168109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00250 554 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 322 329 IPR029510 GO:0016491
Car20g00250 554 Pfam Aldehyde dehydrogenase family 76 546 IPR015590 GO:0016491
Car20g00250 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 350 361 IPR016160 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00250 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00775 Car-Chr3:6470378 Car20g00250 Car-Chr20:1444254 2.32E-46 dispersed
Car11g01168 Car-Chr11:9362078 Car20g00250 Car-Chr20:1444254 2.68E-67 dispersed
Car12g00001 Car-Chr12:9331 Car20g00250 Car-Chr20:1444254 1.35E-107 dispersed
Car17g00339 Car-Chr17:2119106 Car20g00250 Car-Chr20:1444254 1.28E-63 dispersed
Car02g00487 Car-Chr2:3781178 Car20g00250 Car-Chr20:1444254 0 transposed
Car02g00486 Car-Chr2:3775939 Car20g00250 Car-Chr20:1444254 5.43E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00477 . 6 516 Aldehyde Dehydrogenase Gene Family AT3G24503 66.7 1.3e-205 713.0
Car10g00560 . 1 457 Aldehyde Dehydrogenase Gene Family AT3G24503 65.9 4.8e-187 651.4
Car12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 9.4e-159 557.4
Car11g00103 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.1e-154 542.0
Car11g00103 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 3.6e-257 884.4
Car12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 9.5e-250 859.8
Car05g00003 . 1 545 Aldehyde Dehydrogenase Gene Family AT3G48000 68.0 2.6e-223 771.9
Car11g00477 . 17 516 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 8.8e-155 544.3
Car10g00560 . 18 457 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 7.3e-141 498.0
Car12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 4.8e-169 591.3
Car11g00103 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 5.8e-167 584.3
Car05g00003 . 1 389 Aldehyde Dehydrogenase Gene Family AT1G23800 66.6 2.0e-146 516.2
Car11g00477 . 17 360 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 4.0e-99 359.0
Car04g01154 . 83 543 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 1.8e-168 589.7
Car09g00694 . 14 338 Aldehyde Dehydrogenase Gene Family AT4G34240 59.6 1.3e-118 424.1
Car02g01035 . 4 185 Aldehyde Dehydrogenase Gene Family AT4G34240 50.5 3.3e-45 180.3
Car04g01154 . 144 541 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 2.5e-165 578.9
Car09g00694 . 10 338 Aldehyde Dehydrogenase Gene Family AT1G44170 64.6 7.0e-131 464.5
Car02g01034 . 1 282 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 8.4e-76 281.6
Car16g00681 . 47 524 Aldehyde Dehydrogenase Gene Family AT4G36250 61.3 3.8e-181 631.7
Car02g01034 . 1 284 Aldehyde Dehydrogenase Gene Family AT4G36250 60.9 5.6e-100 362.1
Car20g00250 . 39 551 Aldehyde Dehydrogenase Gene Family AT1G79440 75.2 3.4e-228 788.1
Car02g00487 . 2 289 Aldehyde Dehydrogenase Gene Family AT1G79440 78.5 8.7e-131 464.5
Car11g01168 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.6 2.7e-245 845.1
Car03g00775 . 211 714 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 1.9e-166 583.2
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT1G74920 76.2 6.5e-229 790.4
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 2.7e-230 795.0
Car12g01124 . 39 534 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.1e-267 916.8
Car13g00771 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 3.5e-263 904.4
Car17g00339 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 7.0e-278 953.4
Car08g01144 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.1 8.3e-271 929.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00250 Car_Chr20 FPKM 4.21393 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.293807