Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00250 ATGACTATGATGGTCGCTGTAAGAGCAATCGCAGCCACAACAGCTCGATCAGTGGTGCGATCGACCAGGCTCCCTCTTCAATCTCCATCGCTATATGTGTTTGCTCAGCGGAAATCTCACTCCCACACGCTTCTCATTCGTCAGATGAGCTCCGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGCCAAGGCCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCGGATCGACGACTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGGCTGGTCCCCTTCATGAGTATTTGTGTTCAATTGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCGGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTCGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATGGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAGTCTGCAAGTTGGTGATGGTTTCGGTGAAGGTGTATCTCTGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCCAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCGGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCCTGGGGAACATGGGCAGCAACTAG 1665 45.77 MTMMVAVRAIAATTARSVVRSTRLPLQSPSLYVFAQRKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKEELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKAGPLHEYLCSIVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAMAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQSLQVGDGFGEGVSLGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMGSN 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1444254 1455687 + Carg03416-RA Car20g00250 168109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00250 554 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 322 329 IPR029510 GO:0016491
Car20g00250 554 Pfam Aldehyde dehydrogenase family 76 546 IPR015590 GO:0016491
Car20g00250 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 350 361 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00775 Car-Chr3:6470378 Car20g00250 Car-Chr20:1444254 2.32E-46 dispersed
Car11g01168 Car-Chr11:9362078 Car20g00250 Car-Chr20:1444254 2.68E-67 dispersed
Car12g00001 Car-Chr12:9331 Car20g00250 Car-Chr20:1444254 1.35E-107 dispersed
Car17g00339 Car-Chr17:2119106 Car20g00250 Car-Chr20:1444254 1.28E-63 dispersed
Car02g00487 Car-Chr2:3781178 Car20g00250 Car-Chr20:1444254 0 transposed
Car02g00486 Car-Chr2:3775939 Car20g00250 Car-Chr20:1444254 5.43E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00250 K17761 - csv:101217352 912.909