Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00263 ATGAAGTTCTATTCAGCATCGTTGTTTCCTTTGTTTTTTGTTATTGTTAATCTACTTCCCTTTTCCATTGCCGACCTCGAATCCGACAAGCAAGCTCTTCTTGACTTTGCATCTTCGGTTCCACATCGTCGGAGCCTCAACTGGAACGACACTGCCTCTGTATGCACAACTTGGGTTGGCATTACTTGTAGTGAAGATGGAACTCATGTGGTTACCCTCCGGTTACCGGGGATTGGACTTGTCGGTTCGATTCCTTCTAACACTCTAGGGAAACTTCATGGTCTCAAGGTTCTCAGTCTCCGTTCCAACCTCCTTAGCGGAAGAATACCGTCCGATATCACCTCACTTCCTTCTCTTCAATATCTTTTTCTCCAACGGAATAACTTCTCTGGTGGTGTTCCGTCCTCCTTTTCGCCTACTCTTAACGTATTGGACCTATCGTTCAATTCATTAGAAGGGAAGATTCCAAAGTCTATACAAAATTTGACACAACTAACTGGATTGAACCTTCAGAACAACAATCTTTCTGGTTCTATACCGGATATCGACCTCCCGAAGCTCAAGCATTTCAATATAAGCTATAACCATCTCGTTGGTTCTATTCCGACTTCTTTGAATACATTCCCGAGTTCGTCGTTCATTGGAAATCCTTCATTATGTGGAGCGCCTGTAAACACTTGCTCCGTAGACCTTTCTCCAGCTCCTAATGCTCCATCTTCACCTGCCATTTCTCAAAAGCAGAGCTCGAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTCTTCCTTCTATTCCTCGGAGTTCTTTTTATGGTTTTGTGTTGTTTAAGGAAAAAGGACGGTGAACGCTCCGGCACGAGAAAAGGGAAGGTATCGGGTGGCGGGAGAAGTGAAAAACCGAAAGAGGAGTTCGGTAGTGGCGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCGTTTAACTTCGATCTTGAAGATCTATTGAGAGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTGGAGGAACCTACCACTGTTGTCGTGAAAAGGTTGAAGGAAGTGGTGGTGGGGAAGAGGGAGTTTGAACAACAAATGGAGATTGTGGGAAGGATCACGCAGCACCCGAACGTCATGCCACTCCGAGCGTATTATTACTCAAAGGATGAAAAGCTCCTCGTTTATGATTACGTCCCGGGAGGCAGCTTGTCGTCACTTTTGCATGGAAACAGAGGAGGGGAAAGAACTCCGCTCGACTGGGACTCGAGAGTGAAGATCGCTCTTGCAACGGCGAAGGGAATTGCTCATATCCATACAGTGGGCGGTCCGAAATTCACCCATGGAAATATCAAGGCCTCAAACGTTCTCCTAACTCAAGATGTGAATGCCTGTGTTTCCGACTTTGGCCTTACTCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGATTATCGTGCGCCCGAGGTGATCGAAGCTCGGAAACACACACACAAGTCAGATGTTTACAGCTTTGGTGTTCTTCTTCTCGAAATGTTAACTGGAAAAGCTCCCCTGCAATCACCACGTCGTGACGATATGGTCGATCTCCCTCGGTGGGTCCAGTCTGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTCGAGCTAATGAGGTACCAGAATATCGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAGCATGGACGAAGTCGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCGTCCGAAGAGAACAAATCGAAGGACTCAAATGTGCAGACCCCATGA 1893 46.33 MKFYSASLFPLFFVIVNLLPFSIADLESDKQALLDFASSVPHRRSLNWNDTASVCTTWVGITCSEDGTHVVTLRLPGIGLVGSIPSNTLGKLHGLKVLSLRSNLLSGRIPSDITSLPSLQYLFLQRNNFSGGVPSSFSPTLNVLDLSFNSLEGKIPKSIQNLTQLTGLNLQNNNLSGSIPDIDLPKLKHFNISYNHLVGSIPTSLNTFPSSSFIGNPSLCGAPVNTCSVDLSPAPNAPSSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLGVLFMVLCCLRKKDGERSGTRKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMEIVGRITQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAHIHTVGGPKFTHGNIKASNVLLTQDVNACVSDFGLTPLMNVPTSRTADYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1527659 1530316 - Carg03403-RA Car20g00263 168122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00263 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Car20g00263 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Car20g00263 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00263 630 MobiDBLite consensus disorder prediction 605 621 - -
Car20g00263 630 MobiDBLite consensus disorder prediction 605 630 - -
Car20g00263 630 Pfam Protein kinase domain 340 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00263 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515
Car20g00263 630 MobiDBLite consensus disorder prediction 286 311 - -
Car20g00263 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00246 Car-Chr3:3686194 Car20g00263 Car-Chr20:1527659 0 dispersed
Car07g01169 Car-Chr7:7070982 Car20g00263 Car-Chr20:1527659 0 dispersed
Car10g00545 Car-Chr10:2736874 Car20g00263 Car-Chr20:1527659 0 dispersed
Car11g00462 Car-Chr11:2548674 Car20g00263 Car-Chr20:1527659 0 dispersed
Car12g01202 Car-Chr12:11466762 Car20g00263 Car-Chr20:1527659 0 dispersed
Car16g00071 Car-Chr16:459309 Car20g00263 Car-Chr20:1527659 0 dispersed
Car20g00263 Car-Chr20:1527659 Car04g00118 Car-Chr4:623801 1.19E-20 wgd
Car20g00263 Car-Chr20:1527659 Car04g01016 Car-Chr4:5823672 1.74E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89599 PF00069 Pkinase 6.10E-38 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00263 - - csv:101221378 1087.79