Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00275 ATGCCGGAGATCGAACCCTCTCCCCCCGATAACGATGCCTTATTTGGCAGGTACGAGCTCGGCAAGCTCCTTGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCATTCCGGCCAAAGCGTCGCCATCAAAGTCATCAGCAAGAAGAAGATCAACGGCTCAATCCTAATGCTCAACATCAAGCGGGAGATCACCATCATGCGCCATCTCCGCCACCCTCACATCGTCAAACTCCTTGAGATCCTCGCTACCAAATCCAAGATCTACTTCGTCATGGAGTTCGTCAGAGGCGGTGAGCTCTTCGCTAAGATCGCCATTGGCAGGTTCAGCGAGAATCTCAGCCGGAAATTCTTCCGCCAGTTGATCTCCGCCGTTGGATTCTGTCACGCGCGTGGGATCTACCACCGCGATTTGAAGCCGGAGAATCTCCTCGTCGATGAGAATGCGGATCTGAAGGTTTCCGACTTCGGTCTCAGTGCGGTTACGGATCAGATCCGCGCCGATGGCCTTTTGCATACTCTCTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTCTATCGAAGAAGGGCTACGACGGTGCGAAAATCGATGTGTGGTCATGTGGTGTGACTCTCTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATTCGAATCTAATGGTGTTGTATAAGAAGATTTACAGGGGGGATTATCGGTGTCCTAAATGGATGTCGCCTGATCTCCAGAGGTTTCTGTCACGACTTCTCGATACGAATCCCCAAACCAGGATCACCATCAATGAGATTCTGAATGATCCGTGGTTCACAAATGGAGAAGATACAGACATCAATTTCTACAATGATTATGAGGTCAAATCGGAAGCGAAGGTCGAATCTCCATCGAAGAACTTAAACGCATTCGACATTATATCGTTCTCGTCGGGATTAGATCTGTCTGGTTTGTTCGACGATTCGCAATACGCAGTGGAGGACAGTGAGCGATTCGTACTGGCAGAGTCGCCAGAAAAGATCCTGGAAGAGGTGGAGGAATTCTCTAGGTCTGAGAATTTGAAGGTTAAGAAACAGAGAGAATTTTTAGTTGAATTGTTTGGACAGAATCATAATTTTTCTATCCGGATAGAAATTTTCCGGTTGATCGACGGATTGGCGGTGGTGGAGGTGAGAAGGAGAGGTGTCGATGCAGGATCATATAAGCAACTGTTGAAGAAAAAGCTGAAATGTCATCTCATCGACAACCTAGCGTCGACGTCCCAATAG 1269 49.41 MPEIEPSPPDNDALFGRYELGKLLGCGAFAKVYHARDLHSGQSVAIKVISKKKINGSILMLNIKREITIMRHLRHPHIVKLLEILATKSKIYFVMEFVRGGELFAKIAIGRFSENLSRKFFRQLISAVGFCHARGIYHRDLKPENLLVDENADLKVSDFGLSAVTDQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVTLFVLNAGYLPFNDSNLMVLYKKIYRGDYRCPKWMSPDLQRFLSRLLDTNPQTRITINEILNDPWFTNGEDTDINFYNDYEVKSEAKVESPSKNLNAFDIISFSSGLDLSGLFDDSQYAVEDSERFVLAESPEKILEEVEEFSRSENLKVKKQREFLVELFGQNHNFSIRIEIFRLIDGLAVVEVRRRGVDAGSYKQLLKKKLKCHLIDNLASTSQ 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1595226 1596494 + Carg03391-RA Car20g00275 168134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00275 422 Pfam NAF domain 299 358 IPR004041 GO:0007165
Car20g00275 422 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Car20g00275 422 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00275 422 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Car20g00275 422 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00275 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00512 Car20g00275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01183 Car-Chr7:7170469 Car20g00275 Car-Chr20:1595226 7.80E-168 dispersed
Car20g00275 Car-Chr20:1595226 Car07g00152 Car-Chr7:901940 4.14E-161 dispersed
Car02g00512 Car-Chr2:4003411 Car20g00275 Car-Chr20:1595226 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89600 PF00069 Pkinase 5.20E-70 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00275 - K12761 cmos:111448499 765.763