Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00276 | ATGGCTACCAAGACTAAGATTTACTTTGTTTTGGAATATGCAAAAGGTGGTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGAATGAGGATGTTGCTTGGAAATACTTTTATCAATTAATCCATGCTATTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGACATAAAGCCTGAGAACTTACTGCTTGATGAAAATGAAAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTCTAGTCGAGTCCGGGCATCGAGATGGGTTGCTACACACGATTTGTGGCACACCGGCTTATGTTGCCCCTGAAGTTATCAGTAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTCGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCGTTCCACGACTCGAACTTAATGGAGATGTATAGAAAGATTGAGAAAGCAGACTATAAATGTCCTAGTTGGTTCCCTCGTGAAATGCGGAGGCTGCTAAGTCGGATGCTTGATCCAAACCCCGTTACGAGGACTTCCGTAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCTATGAACGTAAGAAGTGGAACAAAAGATGATGCTATAGCGGCTGTTTCAGATGGAAATCAAGAGATGGATAGACCTCCAACTTTGAATGCGTTCGACCTCGTCTCCCTTTCGACAGGGTTCGACCTATCGAGTTTATTTGAAGACGATTCAAGGAAGAAAGAAAGGTTGTTTACTTGTAGAAAACCGGCCTCTGTTCTTCTCTCGAAACTAGAAGAAATTGCTAAACTTGTTCGGTTTCGAGTGCAGAAGAAAGAAGCAGGCCTACTGAGGCTTGAGGCACTAACAGAGGGAAAAAAAGGGGTGTTGTCCATTGATACAGAGATCTATGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGTGAGCACGAGCAGCAGTAG | 1053 | 42.26 | MATKTKIYFVLEYAKGGELFDKVAKGRLNEDVAWKYFYQLIHAIDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALVESGHRDGLLHTICGTPAYVAPEVISRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIEKADYKCPSWFPREMRRLLSRMLDPNPVTRTSVAMIRQSSWFKKGLRSMNVRSGTKDDAIAAVSDGNQEMDRPPTLNAFDLVSLSTGFDLSSLFEDDSRKKERLFTCRKPASVLLSKLEEIAKLVRFRVQKKEAGLLRLEALTEGKKGVLSIDTEIYEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEHEQQ | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1597906 | 1598958 | - | Carg03390-RA | Car20g00276 | 168135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00276 | 350 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 52 | 64 | IPR008271 | GO:0004672|GO:0006468 | |
| Car20g00276 | 350 | Pfam | Protein kinase domain | 2 | 188 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Car20g00276 | 350 | Pfam | NAF domain | 219 | 277 | IPR004041 | GO:0007165 | |
| Car20g00276 | 350 | ProSiteProfiles | NAF domain profile. | 217 | 241 | IPR018451 | GO:0007165 | |
| Car20g00276 | 350 | ProSiteProfiles | Protein kinase domain profile. | 1 | 188 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00919 | Car-Chr10:6982102 | Car20g00276 | Car-Chr20:1597906 | 0 | dispersed | |
| Car20g00276 | Car-Chr20:1597906 | Car03g00265 | Car-Chr3:3839361 | 2.92E-162 | dispersed | |
| Car20g00276 | Car-Chr20:1597906 | Car07g01185 | Car-Chr7:7195590 | 5.26E-165 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 89601 | PF00069 | Pkinase | 2.10E-52 | CL0016 | Car | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00276 | - | - | csv:101206404 | 610.142 |