Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00278 | ATGGGTATCACCACTTCTCATACCCCAAAAAATGTAGTGATTTTTGTCTTAGCTTTGCAGCTGGTCTTCCTTTTGATGGGCAGCTCCTCAGCCCAGCTCTCCTCTTCCTTCTACTCCAAGACCTGTCCCAAGCTCCTCCCGATCGTCCGCTCGGGCGTCCAATCCGCCATCGCTAAGGAAACCCGCATGGGCGCTTCCCTTCTCCGTCTCCACTTTCATGACTGCTTTGTTAAAGGATGTGATGGGTCAATTCTTTTAGACGATACTGCCACTTTTAGAGGAGAACAAACAGCTCCTCCAAATAATAGGTCTGTTCGAGGTTTTGACGTCATAAAAGCTATTAAGAGTAGTGTGGAAAAAGCTTGTCCTGGTGTTGTCTCCTGTGCTGATATTTTGACTCTTACAGCTCGTGATTCAGTCAACATTTTGGGAGGACCAACTTGGGAGGTGAAACTAGGACGAAGAGATTCGAAAACAGCTAGCTTCTCCGCCGCTAGCAGCGGTGTCATCCCTCCGCCTAGTTCAACCCTTGCTAACCTCATCAATCGATTCAGTGCTAAAGGCCTCTCCACTAAAGATATGGTTGCCTTGTCTGGTATTTACTAA | 606 | 47.52 | MGITTSHTPKNVVIFVLALQLVFLLMGSSSAQLSSSFYSKTCPKLLPIVRSGVQSAIAKETRMGASLLRLHFHDCFVKGCDGSILLDDTATFRGEQTAPPNNRSVRGFDVIKAIKSSVEKACPGVVSCADILTLTARDSVNILGGPTWEVKLGRRDSKTASFSAASSGVIPPPSSTLANLINRFSAKGLSTKDMVALSGIY | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1602725 | 1604315 | - | Carg03388-RA | Car20g00278 | 168137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00278 | 201 | Pfam | Peroxidase | 49 | 199 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Car20g00278 | 201 | ProSiteProfiles | Plant heme peroxidase family profile. | 32 | 201 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Car20g00278 | 201 | ProSitePatterns | Peroxidases active site signature. | 64 | 75 | IPR019794 | GO:0004601 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car20g00278 | Car-Chr20:1602725 | Car10g00921 | Car-Chr10:6989501 | 3.42E-96 | dispersed | |
| Car20g00278 | Car-Chr20:1602725 | Car20g00281 | Car-Chr20:1617202 | 7.68E-46 | proximal | |
| Car20g00278 | Car-Chr20:1602725 | Car20g00279 | Car-Chr20:1609496 | 9.23E-62 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00278 | K00430 | - | csv:101207371 | 329.331 |