Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00287 ATGCCTCCGAATCTTTGCCTCATTTTCTTCTTCTTCTTCATTAATCTCTCCGCCCTAAGCTTTTCTCCGGCCTCAGCCGTCGGATTCAACTGGGGCACGGCGGCGTCCCACCCTCTTCCCCCGGTCAAGGTTGTGGACCTCTTGAACTCCAACAACATCACCAAAATCAAGCTTATCGATCCCAATCCCCTCGTTCTTCAGGCCTTATCTGGCTCCAATGTTCAAGTCACCGTCGGCATTCCCAATCTCATGCTCAAAATCTTAAACTCTTCCAGAAAAGCTGCCGAAAGTTGGGTTCACGATAATGTCACTAGGTATCTCTCCGGCGGCGCAGGCGGTGTTCGAATCGAATACATAGCAGTTGGAGATGAACCATTTCTTCAAACTTATGGGGATCAGTATTATCCGTATGTCATGGGAGCAGTCGCCAACATCCAGGGAGCTATAGCCAAAGTAAACTTGGAAAGTAGGATAAAAGTTGTAGTCCCGTGCAGTTACGACGCGTTTCTGTCTGAATCTGGCCTTCCTTCGAAGGGACACTTCCGACCTGAATTGAACAAAACAATGATCCAGCTCCTGACATTTCTTACCACGCACCGATCACCTTTCTTTGCAACCATTTCCCCGTACTTAATTCTGCGTCAAAACAAGAATATTTCTCTCGACTTTACCCTCTTCAAGGAAACAGCACGCCCCCATAACGATAGCCATAGAACTTACAAAAACACCTTTGAGTTAAGCTATGATACCTTAGTTGCAGCTTTATCGAAGATCGGGTTTTCGATGGTTGATATAGTTGTGGCACAGATTGGATGGCCTACTGATGGAGCAGGGAATGCTAACTCATCAACAGCTGAAACGTTTATGAAAGGCTTGATGGATTTCATCCACAGCAGATCAGGAACCCCCCTACGACCTCGTCGTCCACCACTCGAGACTTATATCTTAAGCCTATTAGACGAAGATCAGAGAAATATATCCACTGGGCCATTTGAGAGACACTGGGGAGTGTTCACTTTTGATGGTCAAGCTAAGTACCATCTAAACTTCGGTCAGGGCACAAAAAGCCTTGTGAACGCCCAAAATGTTGAGTACCTCTCCCCCAAATGGTGTGTTCTCAACAACAACAAAGATTTATCTAATGCAAGTGCCAGTGCTTTAGAGGCATGTTCGGTCGCTGACTGCACTGCGCTCGTTTCGGGTGCATCTTGCTCTGATATTGTTTGGCCTGGTAATATTTCTTATGCATTCAATAGCTACTATCAGCAGAATGATCAAAGAGCAGACAGTTGTGACTTCGGAGGGTTGGCCCTGATCACAACGGTCGATCCATCGAACAGTAACTGCAGATTTCCTGTTCAAATTCGAACTTCGAATTCTCATTCACTTGATGCTTCCTCTCTTCTGAAGACAATATCATTATCAGCACTCTTTTGGCTATCTCAACTGGCTGTATCACAGCTTCGAGATCTAAGAAACGAGTCGTTTTCCGGGATCAACCGTTATCTTCAAATGAGGAGACGGCTCTCCTACCTCCAGATTTTGTGGTATGCTTCCTTTCTCCATTCTGGTTCTGATTCGATTCGGGAAAATTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCCAATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGTCTCAGTTGATCAGAGAGCGGATACTGTGAGTAGTATAGTATATGAAGCAAATGCTAGAATGCGAGATCCAGTGTACGGATGTGTAGGAATAATCTCATTTCTGCAAAATGAAGTGTCCCAATTGGAAATGCAACTAGCAGAAGCACAGGCAGAAATCTTAAGCTTTCAGATGCAGCAGCCAATGGCTCCGATGACATTCCCGACAACCCAAATGGATCAGAGTTACATGTTTGAACATTCAAATAATTAA 1992 45.63 MPPNLCLIFFFFFINLSALSFSPASAVGFNWGTAASHPLPPVKVVDLLNSNNITKIKLIDPNPLVLQALSGSNVQVTVGIPNLMLKILNSSRKAAESWVHDNVTRYLSGGAGGVRIEYIAVGDEPFLQTYGDQYYPYVMGAVANIQGAIAKVNLESRIKVVVPCSYDAFLSESGLPSKGHFRPELNKTMIQLLTFLTTHRSPFFATISPYLILRQNKNISLDFTLFKETARPHNDSHRTYKNTFELSYDTLVAALSKIGFSMVDIVVAQIGWPTDGAGNANSSTAETFMKGLMDFIHSRSGTPLRPRRPPLETYILSLLDEDQRNISTGPFERHWGVFTFDGQAKYHLNFGQGTKSLVNAQNVEYLSPKWCVLNNNKDLSNASASALEACSVADCTALVSGASCSDIVWPGNISYAFNSYYQQNDQRADSCDFGGLALITTVDPSNSNCRFPVQIRTSNSHSLDASSLLKTISLSALFWLSQLAVSQLRDLRNESFSGINRYLQMRRRLSYLQILWYASFLHSGSDSIRENSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEAQAEILSFQMQQPMAPMTFPTTQMDQSYMFEHSNN 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1663234 1668021 + Carg03379-RA Car20g00287 168146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00287 663 Pfam X8 domain 369 437 IPR012946 -
Car20g00287 663 Coils Coil 612 639 - -
Car20g00287 663 ProSiteProfiles LOB domain profile. 533 633 IPR004883 -
Car20g00287 663 Pfam Lateral organ boundaries (LOB) domain 534 630 IPR004883 -
Car20g00287 663 Pfam Glycosyl hydrolases family 17 27 350 IPR000490 GO:0004553|GO:0005975
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00516 Car20g00287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00287 Car-Chr20:1663234 Car13g00247 Car-Chr13:4480340 3.33E-148 dispersed
Car02g00516 Car-Chr2:4069449 Car20g00287 Car-Chr20:1663234 4.81E-67 wgd
Car20g00287 Car-Chr20:1663234 Car04g00127 Car-Chr4:676771 6.94E-55 wgd
Car20g00287 Car-Chr20:1663234 Car04g01025 Car-Chr4:5879567 1.06E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5345 PF00332 Glyco_hydro_17 1.00E-60 CL0058 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00287 - - csv:101207915 843.573