Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00300 ATGTGCTGCAATAGCAAATCTGTAAGCCCTAATTTCGTGATGAACGGTGGATTTAAGCAAGGGAAATTGGGGCTTTGTTTGTCTGTTTTGCTGGAATTTTCAGCTACAGATGACCTTATTGGGTTTAGGAGTGCTGTTGAGGAACATGGTTATGATATCGATGAGGCAAGCTTGTGGTATGGGCGAAGTATTGGTTCAAAGAAGATGAGATATGAAGAAAGGACTCCTCTAATGGTTGCAGCCATGTTTGGGAGCTTGAAAGTTCTGTCGTATATCGTTCATCGTGGTTGTGTCGATGTTAATCGGACTTGTGGCTCTGATGGCCCGACGGCGCTACATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCGGATCAGGTTGTTGAACTCTTGCTTGATGCGTCGGCTGATGCAAGTGCTGTCGATGCGAATGGTAATCGGCCTAGTGACTTGATTGGTCGTGATTTTAGTTTAGCTTCGTATTCGAGGAGAAAGGTATTACAACAATTGCTCAATGGTTGGGAAGAAGATGGCCTTGGGTCGTCGGAGGCGATATTTTACGAGATGGAAACGCTGGAGCCGGTGGAGGCTTCGAGCTCTTGGGCTGCAAGAGATGGGATGGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCTGATATCAAGAATGAAATGTATAGCACAGATGAGTTTAGGATGTATACTTTTAAGATCAAACCGTGTACGAGAGCTTACTCTCATGATTGGACGGAGTGTCCGTTTGTTCACCCCGGGGAGAACGCGAGGAGGCGGGATCTAAGGAAATACCATTACAGCTGCGTCCCGTGCCCGGAATTCAGAAAGGGAACATGTAGACAGGGCGATGCGTGTGAATATGCTCATGGAATTTTCGAATGTTGGCTGCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGACGAAACTGGATGCACCCGAAAAGTTTGTTTCTTTGCTCACAAACCGGAAGAGCTCCGCCCCTTGTATGCTTCAACGGGTTCTGCTGTACCGTCGCCGAGATCAATCTGTGGTTCTTCATTAGACATGGCGTCGATCAGCTCACTTACCCTCGGTTCTCCTTCAGCTTTGATGCCTTCTTCATCGACTCCACCTTTAACTCCTACTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAACCTCCGACCTTGCAACTTCCAGGTAGCAGGTTGAAGGCGTCTTTGAGCGCAAGAGACGTGGATTTAGATGTCGAGTTACTTAGTCTCGAAAGTCAGCGTCGTCGACAAAAGCAGTTGATCGATGAGATATCATGTCTACCTTCCCCTTCCAGATGGAACAATGGCTTGTCAACCACTGCATCTTTTCCATCCCCAAGGAGTAGTAGAAATGGGGAGTTGAATGGACTTGGAGGCATTAAGCCTACGAACCTCGAGGAGTTTTTCGGGTCGTTAGATCCTGCAATGTTGCCTCAATTACAAGGACTTTCACTGGATTCTGTAGGAACTCAGGTACAATCACCTTCCGGGATTCCGATGCGCCAAAGCCTGAATCGGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCCCCACCTGCACGGTCGTCTCAACCATCCGTGTCTGCTGCAGCTAGCGTTCTAAGTCCCAGGGGTGCGCTTTTCACCAACCGGAGCCAGAGCTTCATCGAACAGAATGCCATGCCTTCGAACCTATCGGATTGGGGTTCGCCCAATGGAAAGCTAGACTGGGGAATTCATGGAGAAGAACTCAACAAGCTAAGGAAATCTGCATCATATGGGTTTCAAGGCAGTTCTCTGGCAATGCCCACAATGCACGCTACCGCTCCCGAACCAGACGTGTCCTGGGTTCAGTCCTTAGTGAAGGATACTCCGAGCGAGAACTCGGCGCAGTTGAGCATGGATGAGCAGCAGAAACAGCAGCTTTGGCATCTTGACAATAGCGATTTGAAGCAAATGTACATGGAACAGGAGCAGCTAGTTGCT 2007 48.58 MCCNSKSVSPNFVMNGGFKQGKLGLCLSVLLEFSATDDLIGFRSAVEEHGYDIDEASLWYGRSIGSKKMRYEERTPLMVAAMFGSLKVLSYIVHRGCVDVNRTCGSDGPTALHCAVAGGSAVSDQVVELLLDASADASAVDANGNRPSDLIGRDFSLASYSRRKVLQQLLNGWEEDGLGSSEAIFYEMETLEPVEASSSWAARDGMEKKEYPVDLSLPDIKNEMYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDLRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVPSPRSICGSSLDMASISSLTLGSPSALMPSSSTPPLTPTGVSSPMGGTMWQTQPPTLQLPGSRLKASLSARDVDLDVELLSLESQRRRQKQLIDEISCLPSPSRWNNGLSTTASFPSPRSSRNGELNGLGGIKPTNLEEFFGSLDPAMLPQLQGLSLDSVGTQVQSPSGIPMRQSLNRSFLSSYANSIGSPPARSSQPSVSAAASVLSPRGALFTNRSQSFIEQNAMPSNLSDWGSPNGKLDWGIHGEELNKLRKSASYGFQGSSLAMPTMHATAPEPDVSWVQSLVKDTPSENSAQLSMDEQQKQQLWHLDNSDLKQMYMEQEQLVA 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1736664 1739315 - Carg03366-RA Car20g00300 168159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00300 669 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Car20g00300 669 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Car20g00300 669 MobiDBLite consensus disorder prediction 449 469 - -
Car20g00300 669 Pfam Ankyrin repeats (3 copies) 65 138 IPR002110 GO:0005515
Car20g00300 669 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Car20g00300 669 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Car20g00300 669 MobiDBLite consensus disorder prediction 449 465 - -
Car20g00300 669 MobiDBLite consensus disorder prediction 366 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00534 Car20g00300 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00909 Car-Chr14:5436453 Car20g00300 Car-Chr20:1736664 2.33E-148 dispersed
Car20g00300 Car-Chr20:1736664 Car12g01256 Car-Chr12:11829776 6.82E-55 dispersed
Car02g00534 Car-Chr2:4159493 Car20g00300 Car-Chr20:1736664 0 wgd
Car20g00300 Car-Chr20:1736664 Car04g00144 Car-Chr4:787657 0 wgd
Car20g00300 Car-Chr20:1736664 Car04g01038 Car-Chr4:5949558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5347 PF12796 Ank_2 1.40E-06 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00300 - - csv:101213761 1058.9