Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00308 ATGCCAGCCATTACTCGAGGAAGTCACTGTAAGATTGAGAATGGAACGAAATTGGACGATGTCATGGTTGCGAGAGTGACTGATGCATCTGCTATGGAGAAAACTCCTCCCAAGCGGAAACTGAGATCCGGTGATGCGCAGAGTCAACAAAGCCCTGTCTCTGAACCGATGAATTGGAAATCGCCTCGTCGGTGTCTCAATTCGAGTCCAAAGAGCGTTCCACATGTTTCTTTTGACCATATTCAGAGCGATGGGAAAACGTTTATTGATGGCTTTCCTAAATTACATATGTCGCCGATAAAATGCTTGTTCAAGAACCCCAGTGTCAAACCAGATTGGAATCCTAAAGATACCCAACATATAAAAACAGCAAAGGAAGCATTGCACGTATCGACAGCTCCAACTACAATCATGTGCCGCGAGGATGAACAAAGCAGAATCTTAAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGAAAATCCTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTCATTGGGTGAAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCTATAAACTGCACTTCGTTAGCTAAGACGTCGGACATTTTCACTAAGATAATGGGGGAAGCCCAACCGCAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAAAGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCACAAAGATGATGTTAATAATTGCCGATGAATTGGATTATTTAATTACAAAGGATAAGGCAGTGCTACATAATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGCATTTTGATAGGAATTGCAAATGCTATTGACTTGGCAGATCGTTTTCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCCGGTCATAACTTATAGGGCTTATTCCAAGGAACAGATCCTCAAGATTCTTCATCAACGGTTAAATGTGCTTCCTTTCGTTGTCTTTCAGCCGCAAGCTTTGGAGCTTTGTGCTAGAAAAGTTTCAGCTGTATCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGAAATGCCGTTGAATTGTTAGAGGCGGAACATAAAGCATCCTCTAAGGAGGAAGACCATATAGCATGTGACGCTTCAGCACCTGAGATTGTTAAAAGTCGAGAGTCTCAGATCGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGATTATTTTATGCTCTGTTGTGAAACTCGTTCGTGGAGGAAAGAAGGATACAACCATAGGAGAGGTAAATAAATCATACGTAGACATCTGCAAATCAACACTAATTCCGCCAGTGGGAACCTTAGAACTTTCAAACATGTTCACAGTGCTAAACGACCAGGGGCTCCTCAAACTCGGCCAGTCTCGAGACGATAAGACGAGGCGGGTGTTGCTGAAAGTCGACGAAGCTGACGTCACGTTCGCATTACAGGGAATACGGTTCTTTCGAAATTGCCTTACAGTAAATTAG 1587 43.04 MPAITRGSHCKIENGTKLDDVMVARVTDASAMEKTPPKRKLRSGDAQSQQSPVSEPMNWKSPRRCLNSSPKSVPHVSFDHIQSDGKTFIDGFPKLHMSPIKCLFKNPSVKPDWNPKDTQHIKTAKEALHVSTAPTTIMCREDEQSRILNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLAHWVKESGLQLPDILSINCTSLAKTSDIFTKIMGEAQPQKKRNGSLTPLQHLQSLYSQKAESSCTKMMLIIADELDYLITKDKAVLHNLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPPVITYRAYSKEQILKILHQRLNVLPFVVFQPQALELCARKVSAVSGDMRKALCVCRNAVELLEAEHKASSKEEDHIACDASAPEIVKSRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGEVNKSYVDICKSTLIPPVGTLELSNMFTVLNDQGLLKLGQSRDDKTRRVLLKVDEADVTFALQGIRFFRNCLTVN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1786895 1791259 - Carg03358-RA Car20g00308 168167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00308 528 Pfam AAA lid domain 340 377 IPR041083 -
Car20g00308 528 Pfam CDC6, C terminal winged helix domain 436 514 IPR015163 -
Car20g00308 528 MobiDBLite consensus disorder prediction 42 66 - -
Car20g00308 528 MobiDBLite consensus disorder prediction 29 66 - -
Car20g00308 528 CDD AAA 143 303 - -
Car20g00308 528 Pfam AAA domain 158 278 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01162 Car-Chr9:12340130 Car20g00308 Car-Chr20:1786895 1.80E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00308 K02213 - csv:101205741 812.372