Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00310 ATGGCCCCCACCGCCGGATCTCTCTGCAACAAATTCCTCGCTCTTTTACTGCTTATTGTTCATGTTGGTTGCTTCCTTCTCACTACCGCCGACCACCGCCGCCGCCGCCGTCCCCCGCCCCCCAAGAAAGCCACTCCGACGCCCTCCTGTCTTAAGCCCCACAAGGCTCTGACAAGTTCCTATTCATTTCTCAAACGAATCTTCTCCTCAAAAACCTGCAAAATGGCAATCGAAACCGCTCGCCCACCCACTCCTGCCCGGATATCAGAGGAGATTCCTCCCCCGATGGAGACTCCGACAGCCGGAACGCCGCAGGATTCAGACACCACCACGGCGGAGACTAACCAATTTGTCCACATCAGCAACGACATTTTCCCTTGCACTGCTTGCGGCGAGATTTTCCCCAAGCATCAATTGCTCGAACAGCACCAATCGGCGAAACATGCTGTGTCGGAACTCGCCGATTCCGATTCCGGGAAGAATATTGTTCGAATCATTTTCGAAACGGGATGGACGAGTAAAGAAAAAAGTCCGAAAATCGTTCGAATCTTGAAAATTCACAATAGCCCAAAGATCGTTTCCAGATTCGAGGAGTACAGAGAGTCGGTGAAGGCGAAAGCGGCGGCCCGAAACGGCGCGGTGAAGCGTCGGGACGAGCGGTGCATCGCCGACGGAAACGAGTTGCTGAGGTTTCACTGTGCGACGTTTTTATGCGATTTGGGGCAAAATGGTAATTCCAGCCTCTGCGGGCAGCAATTTTGTAGCATTTGTGGGATAATCAAATCGGGATTCTCCCACAAGTTGGACGGAATATCGACGTTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAACGTGAAGCGGGCGATTCTGGTTTGTCGGGTCATTGCAGGTCGGGTCGGGTCAGACGCCGATGAGCCGGAAAAAGACGGCGAAGGGTTTCACTCCGTCGTCGGGCGAAGTGGTAGTGGGGCCCAGTCCACGTCGGATGAGGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATCGTATACGAAATCTGA 1092 53.94 MAPTAGSLCNKFLALLLLIVHVGCFLLTTADHRRRRRPPPPKKATPTPSCLKPHKALTSSYSFLKRIFSSKTCKMAIETARPPTPARISEEIPPPMETPTAGTPQDSDTTTAETNQFVHISNDIFPCTACGEIFPKHQLLEQHQSAKHAVSELADSDSGKNIVRIIFETGWTSKEKSPKIVRILKIHNSPKIVSRFEEYRESVKAKAAARNGAVKRRDERCIADGNELLRFHCATFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNVKRAILVCRVIAGRVGSDADEPEKDGEGFHSVVGRSGSGAQSTSDEEELLVFNPRAVLPCFAIVYEI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1797606 1798697 - Carg03356-RA Car20g00310 168169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00310 363 MobiDBLite consensus disorder prediction 315 337 - -
Car20g00310 363 MobiDBLite consensus disorder prediction 81 110 - -
Car20g00310 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 153 IPR013087 -
Car20g00310 363 ProSitePatterns Zinc finger C2H2 type domain signature. 127 148 IPR013087 -
Car20g00310 363 MobiDBLite consensus disorder prediction 33 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00829 Car-Chr16:5472356 Car20g00310 Car-Chr20:1797606 2.58E-52 dispersed
Car02g00544 Car-Chr2:4240971 Car20g00310 Car-Chr20:1797606 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5348 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00310 - - csv:101205506 568.54