Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00340 ATGGATCCAAACCTCAACGCTTTCACAGATCGCATGGCTGATTATCAGACCTCTCTAACCCAATCATACGATGATGGGTTTACACTAAATGATTTTGTATTCAACGACCCATCTCCAGATTTTGTTCCTTTCGTTGATAATTCCCTTTTCCCCTACCAACCAGACCCTAACAAGTTTTCAGGGGCGGTGGATTTGAACTTGGGTGTGGTGGCTTCAGGACAAAGCCCTGATGGCGACTCTTCCTCGGACGAGTTAGACTTCAGGGAAAGTGTTCTCAAGTACATCAGCCAAATGCTGATGGAAGAGAATTTGGAGGAGAAGCCTTGCATGTTTTATGATCCTTTGGGTCTTGAAAATACCGAGAAATCTTTCTATGATGCTCTTGGTAAGAACTACCCTCCCCCTTCGCCTAACCAACCTCCCCTAGATTGCGAGAGCTCTGAAGATGTTTGTCGTGGAAGCGACAGTGATCGTACAAGTACTGCTGTTAGTGCTGCCAACAGCAATTCGCCTGACCCCCAATGGGTTGTTGATCCTGGAGAAAGTAAGTCTTCTATACTAACAAGATCTATTCCTAGTAGTTCGTATCAAAGCAGCCTAACTATTAATAGTCATGAGCTTGTCACGGAGCTGTTGGCTCAGAATATCTTTAGTGATAGCACATCCATCTTGCAATATCAAAAAGGGTTGGAGGAGGCAAGTAAGTTTCTCCCAGTGGGTAATCAGCTGAATATCGATCTTGGCAGTGGCAAATTCACAGGAGTAGCTTCTAAGGTAACGGATACAACAGAGAATTCACCTAATGGATCAAAGAGAAGGAAGAATCGTGGACCTGAAGCTGTAGATTTGGATTCAGAAGAAGGGAGAAAAAACAAGCATGCAACCATTTATGGGGATGAGGAAGAATTAACTGACATGTTCGATAAGGTTCTACTCCATGATTGTGGAAGTGAGGCCTCTGCAAATGGTGGATGTGAGAAATTGCAGAATAATCGACAAGTTCATGGTGGATCTAATGCTGGGAAAGCTCGGGAAAAGAAACAGGATAAGAGAAATAACTCTGTGGATTTGAGGAATCTTCTGATATTATGTGCACAAGCTGTGTCTTCTGATGACCGTAGGATTGCGTATGAACTACTTAAGCAGATTAGACAGCATTCTACAACGACTGGGGATGGTTCCCAAAGGATGGCTCATTTCTTTTCTAATGCTCTTGAGGCTCGGATGGTTGGCACTGGCACAGGAAGTAGGATTTACTATGATTCACTAGCTCAAAGCAATATTTCAGCGGCTGATATGTTGAAAGCTTACCAAGCTCATCTTTCATCCTGCCCTTTTAAGAAGCTCTCTCTCTTTTTCATGATCAAAATGATTTTGAAGGTTGCGGAGAATGCTAAAAGTCTGCATGTTATTGATTTTGGCATTTGCTATGGTTTCCTATGGCCAATGTTAATTCAGTTTCTTGCACTACTACCTGATGGTCCACCCAAGCTACGCATTACTGGTATTGATTATCCTCTACCAGGATTTCGTCCAGAAGAAAAGATTCAAGAGTCAGGTCGCCGTTTGGCGAAATACTGTGAGCGCTTTAAAGTTCCTTTTCAATATCAAGCCATAGCATCAAATAACTGGGAAACTATCCGAGTCGAGGACTTAAAGCTTGATAGCAATGACGTGCTAGTTGTGAACTGTTTCTACAGGTTTAACAGCCTACTTGATGAAACTGTCGAAGAAAGTAGTCCAAGGGATATTGTTCTACGTTTAATAAGGAAGATGAATCCAAACATCTTTGTCCATTCGGTGGTTAATGGATCCTACAATGCACCCTTCTTCATAACACGATTCAGGGAAGCACTCTTCCACTTCTCTGCATTGTATGATGCTTTAGACGTTAATTTACCTCGAGACAGTGAAGAGAGGATGATGCTAGAGAGAGAATTTCTCGGTCGCCAAATTATGAACGTAGTAGCATGTGAGGGAGTTCAGAGGGTTGAGAGGCCTGAACCCTATAAGCAGTGGCAGGTTCGGTGTATGAGGGCAGGTTTCAAGCAGCTTCCTTTGGACAAGGAGATCATGTGCAAGTTCAGGACCAAGTTAACATCCCATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGCTGGATGCTTCAAGGATGGAAAGGACGGATAGTCTATGCTTCTTGTTGTTGGGTGCCTGCATAG 2205 43.13 MDPNLNAFTDRMADYQTSLTQSYDDGFTLNDFVFNDPSPDFVPFVDNSLFPYQPDPNKFSGAVDLNLGVVASGQSPDGDSSSDELDFRESVLKYISQMLMEENLEEKPCMFYDPLGLENTEKSFYDALGKNYPPPSPNQPPLDCESSEDVCRGSDSDRTSTAVSAANSNSPDPQWVVDPGESKSSILTRSIPSSSYQSSLTINSHELVTELLAQNIFSDSTSILQYQKGLEEASKFLPVGNQLNIDLGSGKFTGVASKVTDTTENSPNGSKRRKNRGPEAVDLDSEEGRKNKHATIYGDEEELTDMFDKVLLHDCGSEASANGGCEKLQNNRQVHGGSNAGKAREKKQDKRNNSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTTTGDGSQRMAHFFSNALEARMVGTGTGSRIYYDSLAQSNISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLALLPDGPPKLRITGIDYPLPGFRPEEKIQESGRRLAKYCERFKVPFQYQAIASNNWETIRVEDLKLDSNDVLVVNCFYRFNSLLDETVEESSPRDIVLRLIRKMNPNIFVHSVVNGSYNAPFFITRFREALFHFSALYDALDVNLPRDSEERMMLEREFLGRQIMNVVACEGVQRVERPEPYKQWQVRCMRAGFKQLPLDKEIMCKFRTKLTSHYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1938505 1940709 - Carg03326-RA Car20g00340 168199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00340 734 MobiDBLite consensus disorder prediction 126 180 - -
Car20g00340 734 MobiDBLite consensus disorder prediction 323 351 - -
Car20g00340 734 MobiDBLite consensus disorder prediction 256 292 - -
Car20g00340 734 ProSiteProfiles GRAS family profile. 348 732 IPR005202 -
Car20g00340 734 MobiDBLite consensus disorder prediction 323 337 - -
Car20g00340 734 MobiDBLite consensus disorder prediction 156 180 - -
Car20g00340 734 MobiDBLite consensus disorder prediction 267 292 - -
Car20g00340 734 Pfam GRAS domain family 357 731 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00572 Car20g00340 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00340 Car-Chr20:1938505 Car01g00889 Car-Chr1:8233682 5.60E-65 dispersed
Car01g00558 Car-Chr1:3292228 Car20g00340 Car-Chr20:1938505 6.67E-176 wgd
Car13g00086 Car-Chr13:634221 Car20g00340 Car-Chr20:1938505 0 wgd
Car14g00115 Car-Chr14:563954 Car20g00340 Car-Chr20:1938505 0 wgd
Car02g00572 Car-Chr2:4374846 Car20g00340 Car-Chr20:1938505 0 wgd
Car20g00340 Car-Chr20:1938505 Car06g00255 Car-Chr6:1446580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5351 PF03514 GRAS 2.90E-105 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00340 - - mcha:111017073 1144.8