Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00342 ATGGCCATTAATATTCCTCTCTGTATTGCTTCTTTTCTCTCATTTTTTTTACTGGTGGAAGCCAGAATCCCCGGAATTTACTCCGGCGGCCCATGGCAGAGCGCTCACGCCACCTTCTACGGTGGCTCCGATGCTTCCGGCACAATGGGCGGCGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGAGTGAACACGGCGGCGCTGAGTACGGCTCTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCACGCTGGTGCCATTCCGGCAGCCCGTCGATTTTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTGCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGTACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCCGAGTACCGCGCCGGTATCGTCCCCGTCTCTTACCGCCGAGTGCCATGCCGGAAGCACGGAGGAATCAGGTTCACAATCAACGGCTTTCGTTACTTCAATCTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTACGGGTTAGCGTTAAAGGAACAAGAACCGGGTGGATGAGCATGACTCGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTATTAGTGGGCCAAGCTCTGTCGTTTAGAGTAACCGGCAGCGACCGTCGAACCTCAACGTCATGGAACATCGTTCCCGCCCATTGGCAGTTCGGCCAAACTTTCACCGGGAAAAACTTCCGTGTTTAA 777 53.67 MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKHGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1954549 1955471 + Carg03324-RA Car20g00342 168201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00342 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Car20g00342 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Car20g00342 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Car20g00342 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Car20g00342 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Car20g00342 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Car20g00342 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Car20g00342 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Car20g00342 258 PANTHER EXPANSIN 7 257 - -
Car20g00342 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Car20g00342 258 Gene3D - 164 256 IPR036749 -
Car20g00342 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Car20g00342 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Car20g00342 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Car20g00342 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Car20g00342 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Car20g00342 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Car20g00342 258 SMART dpbb_1 67 154 IPR007112 -
Car20g00342 258 Gene3D - 22 160 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00092 Car20g00342 CCT
Car01g00552 Car20g00342 CCT
Car13g00092 Car20g00342 ECH
Car01g00552 Car20g00342 ECH
Car02g00576 Car20g00342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00342 Car-Chr20:1954549 Car04g01707 Car-Chr4:9792612 2.60E-127 dispersed
Car01g00552 Car-Chr1:3258039 Car20g00342 Car-Chr20:1954549 3.73E-170 wgd
Car13g00092 Car-Chr13:680431 Car20g00342 Car-Chr20:1954549 2.59E-169 wgd
Car02g00576 Car-Chr2:4394601 Car20g00342 Car-Chr20:1954549 1.43E-180 wgd
Car20g00342 Car-Chr20:1954549 Car03g00371 Car-Chr3:4536607 2.08E-169 wgd
Car20g00342 Car-Chr20:1954549 Car04g00193 Car-Chr4:1056885 1.40E-169 wgd
Car20g00342 Car-Chr20:1954549 Car04g01084 Car-Chr4:6245571 7.86E-139 wgd
Car20g00342 Car-Chr20:1954549 Car04g02553 Car-Chr4:20180730 3.04E-140 wgd
Car20g00342 Car-Chr20:1954549 Car07g00978 Car-Chr7:5558020 4.77E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00342 - - csv:101203979 523.472