Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00358 ATGGAGGAGGATAACAATGGCGGCTTCTTTCGGAGTTTGATCGACTTGGTGAACGACGTAGCTTTGATCTCAGATTACAGGTACGCGGTCAGGAAGCAGTATTGTAATCTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGCAGGCGCTGCCGGACAATACCGTGGGAGCTCTTGTTTCGTTGAAGAAAGCTATGGAATCTACCAAGGAGTTGCTTAGACTTGGGACGGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAACTTTTGAATCAATTTCAAGAGTTGTCAGAAAGACTAGAGCAAGCTTTGAATGAAATTTCACATGTAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTCCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATGCACAGGATGTCGAGCTGTATTCTAATCTTCACACTCTCTATAACAACAGCAAAGACTTAGCTACTGATCCTTCTATCTTGAAGGGACTGGCTGAAAAGTTGCAGTTGATGAACGTAGATGATCTTACTCAAGAGTCTCTCGCCTTGCATGAAATGGTTTCGGCCAGTGATGGAGATCCAGGGGGCAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGCGCTTCTTCTAAAGAACAAAGTCATCCTCGCACTGGTAGACAAGCGACTGCTGGTAAGAAAGATATATCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTTATTGTCTCCACAGGACAGACCTATGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACACTCGACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGCAGTCTCATAGCTCAATGGTGCGAGGCCAATGGAATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTTACAAATCCTGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGCTAACATTGAAGACAAGCGATCTGCTGCGGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGACCTCCTTTCAACAACCGACCCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTAGATGAATATAAAGTAATGATTGGCGCATCAGGAGCCATTCCACCACTTATTGCACTGCTCAATGAAGGTACTCAGAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTATGTTTCTACCAAGGGAACAAAGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATATTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCTATTCTAGCCATACTGGCCAGCAATTCCGAAGGTCGGGCTGCCATTGGCGCTGCCGAATCCGTCCCCACTTTAGTAGCTCTCATTGGAACAGGATCCCCTAGGAACAGAGAAAATGCAGCTGCAGTTTTGATGCATATTTGCACCGGAGACCGACGACATATCGTGGAAGCAAAGGAGCTCGGAGTGATTAGTTTGCTTATAGATTTGGCTGAAAATGGCACAGATAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATCAACAGGTTTACTGAGCAGCAGAAAGAGGCTGAGGTTCAGACCCGGCTGTTGCTACCGCCACCGCCACCTCCCACAATCGGAAACGTCGAAAGCTAA 1977 45.83 MEEDNNGGFFRSLIDLVNDVALISDYRYAVRKQYCNLARRLKLLIPMFEEMRDMKQALPDNTVGALVSLKKAMESTKELLRLGTEGSKIYLALEREQLLNQFQELSERLEQALNEISHVDLDISDEVKEQVELVLSQFKRARGRNDAQDVELYSNLHTLYNNSKDLATDPSILKGLAEKLQLMNVDDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGASSKEQSHPRTGRQATAGKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIEPPQRSSSSQPSEFTNPAERSKYEALLHKLTSANIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPTLVALIGTGSPRNRENAAAVLMHICTGDRRHIVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEVQTRLLLPPPPPPTIGNVES 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2013808 2017655 + Carg03308-RA Car20g00358 168217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00358 658 Coils Coil 620 640 - -
Car20g00358 658 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Car20g00358 658 Pfam Armadillo/beta-catenin-like repeat 384 422 IPR000225 GO:0005515
Car20g00358 658 Pfam Armadillo/beta-catenin-like repeat 467 504 IPR000225 GO:0005515
Car20g00358 658 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Car20g00358 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515
Car20g00358 658 Coils Coil 95 122 - -
Car20g00358 658 MobiDBLite consensus disorder prediction 230 252 - -
Car20g00358 658 MobiDBLite consensus disorder prediction 231 245 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00541 Car20g00358 CCT
Car13g00102 Car20g00358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00828 Car-Chr18:9305016 Car20g00358 Car-Chr20:2013808 0 dispersed
Car20g00358 Car-Chr20:2013808 Car20g00618 Car-Chr20:3457738 3.84E-142 dispersed
Car09g00565 Car-Chr9:3199288 Car20g00358 Car-Chr20:2013808 7.92E-09 transposed
Car12g00119 Car-Chr12:632396 Car20g00358 Car-Chr20:2013808 3.29E-31 transposed
Car01g00541 Car-Chr1:3209827 Car20g00358 Car-Chr20:2013808 0 wgd
Car13g00102 Car-Chr13:732289 Car20g00358 Car-Chr20:2013808 0 wgd
Car02g00586 Car-Chr2:4455461 Car20g00358 Car-Chr20:2013808 1.14E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00358 - - csv:101221150 1099.35