Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00392 ATGCAAGTGGAGGTGAGCAAACACACAGAGGGGTTCAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGACGCACGTCAGAAGGAGATGGCTACCAGCTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCACGGTCTCTAAGTGAGTCTAGGCCTCGGGCTCTAAGTGAATCTATGAACCGTCGGCTATTTAGAAAATCCGGCGGCGGCGGCGGCGGCGGGGATAATGACGGCGACAGATTTGAAACTGGTATGGTTAGGCGAAAGTCAGAGAGCGCTGCAGCTTCAACTGGACGAGGAAGTCGAAGGTCGATGCAGCGTATCAATGAGGTTCCCGACAAGAAACCCAAGAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGATATCATCGACGTTGAAGACGGTTCCGACGACGATAACGACACCGATGACGACGATAGACCAGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACCACCCTCGAACGTATAGAGAAAAACTTCGTCATTACTGATCCTAGATTGCCCGACAATCCCATTATCTTTGCTTCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGGCATGTTCATACTTTCTATGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTCATTGGAGTTCAACTCGATGACACCAGAAGATTTATGGGCAAATCATTCTAAGATGGTTCAACCTAAACCTCACAGAAAGGACAGTCCTTCCTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATCGAACTGAAACATTTCAAGCCAGTTAAACCTTTGGGATCCGGCGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGAACTGATCAATTTTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTCAACCGTAACAAGGTGCATCGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCATTGTACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGTCCTGGTGGAGAACTGTTTCTGCTTTTGGACAGACAACCCACGAAGGTCTTGAAGGAAGATGCTGTGAGGACTTCTCTTGATGTGAATTCTGCAATTCTGCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAACAATCAAGAGCTCAACAGGCTCCCGTCTTTATGGCCGAACCTATGCGAGCATCGAACTCCTTCGTCGGAACCGAAGAGTACATAGCACCGGTTTGTATTAGCAAACGCCAAACTTCGACTCCAAAACAACCAATACAATGA 1434 45.96 MQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSLSESRPRALSESMNRRLFRKSGGGGGGGDNDGDRFETGMVRRKSESAAASTGRGSRRSMQRINEVPDKKPKKSSRRSFMGIMRKSQSNVDIIDVEDGSDDDNDTDDDDRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRHVHTFYVRSFGTCFIYNLCVTRREKFSISLEFNSMTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIELKHFKPVKPLGSGDTGSVHLVELCGTDQFFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRTSLDVNSAILQLLLPTTNEKKKQSRAQQAPVFMAEPMRASNSFVGTEEYIAPVCISKRQTSTPKQPIQ 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2179721 2184556 - Carg03274-RA Car20g00392 168251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00392 477 MobiDBLite consensus disorder prediction 113 127 - -
Car20g00392 477 MobiDBLite consensus disorder prediction 146 163 - -
Car20g00392 477 ProSiteProfiles PAS repeat profile. 181 226 IPR000014 -
Car20g00392 477 ProSiteProfiles Protein kinase domain profile. 306 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00392 477 MobiDBLite consensus disorder prediction 1 20 - -
Car20g00392 477 MobiDBLite consensus disorder prediction 53 67 - -
Car20g00392 477 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Car20g00392 477 Pfam Protein kinase domain 308 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00392 477 MobiDBLite consensus disorder prediction 1 17 - -
Car20g00392 477 MobiDBLite consensus disorder prediction 48 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00618 Car20g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00392 Car-Chr20:2179721 Car19g00644 Car-Chr19:7764953 1.37E-07 dispersed
Car02g00618 Car-Chr2:4649249 Car20g00392 Car-Chr20:2179721 1.39E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89609 PF00069 Pkinase 6.40E-14 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00392 K20715 - csv:101214662 346.28