Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00400 ATGGACGACTTCTTAGACAATATACCGTCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATTATCCCCGTTGAGTCCGCTCATCGAGCCATTTCGTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGAATTTAGAGATACGACTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCAAACAGCGAGAAACTTCAACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATACCGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAGCCAACCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTCAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAACCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTATGGAAATGGTTGATAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTTTCATCACGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGATTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGACACATTGAATATGTTGAATTTTGATGTCACTAAAAAATGTCTCGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAATCTCAGATTCAGGAAGCTCTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCTCCTCCTACATATTTTAGAACAAACCGTTTAACAAGTGCTTTTCAAGAAATTGTCGATGCCTATGGCGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTATTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAAAGGGAGAAAAATGAAGAAATCGGCCATGAAGAGAAGGATAAATGGATCTTTGACCAATGCATTGCTTCTGATTCCAATCTTATAAACCTGTTGACGAAACAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGTCACTTTTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTCGGCGCGTCTGCCTACAAGTGTAGAGATACCACATGCAGTGATGTACACACTGTTGGGTTAGTTAAATACCGCGATGCCTATCCATTTGGTGTTGACCCAAGTTGGCGCGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTATCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTACTTTAATGCACGCTTTACTGGAAGCTCACTCGATATCAGGTACCAGTTTGTACCACAAGTGATTTTTCTTAACAGCCTTTTCGGATATCTATCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAATCAAGCTGGAATTTGTTTCCTTCCGAGTTAGATCTTGTCGCTAGTTATAGATTTCAAGGTCGTACTTATGGGATGCTTGGAACCTCTGAGATGGATCTTGAAGTGGAACCTGATTCGGCAAGGCAACACCAAGAGGATTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCGTCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTACGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGATTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTCATGATGGAGACCCTTAGTGCCTTCCTTCATGCCTTACGTCTCCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCTACAAGTTCAAACCTTTTTCCTTCGCCTCCATCGACGGGGACGAAGATTAA 2529 40.41 MDDFLDNIPSMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELENLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYTEDGSLLEQEMRPGPSSQPGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVDKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKREKNEEIGHEEKDKWIFDQCIASDSNLINLLTKQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDTTCSDVHTVGLVKYRDAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQSSWNLFPSELDLVASYRFQGRTYGMLGTSEMDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDGDED 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2255944 2265119 - Carg03266-RA Car20g00400 168259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00400 842 Coils Coil 93 127 - -
Car20g00400 842 Pfam V-type ATPase 116kDa subunit family 710 834 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car20g00400 842 Pfam V-type ATPase 116kDa subunit family 487 675 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car20g00400 842 Pfam V-type ATPase 116kDa subunit family 37 459 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00626 Car20g00400 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00229 Car-Chr5:1216470 Car20g00400 Car-Chr20:2255944 2.36E-17 dispersed
Car12g00408 Car-Chr12:2605249 Car20g00400 Car-Chr20:2255944 0 dispersed
Car19g00527 Car-Chr19:6865119 Car20g00400 Car-Chr20:2255944 0 dispersed
Car02g00626 Car-Chr2:4718072 Car20g00400 Car-Chr20:2255944 2.59E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00400 K02154 - csv:101216514 1512.28