Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00407 | ATGGAAGGCAGTGATTCAATCATCACTCTTTCATCAACTCCTCCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCGCCGCCGCCGCCTGTCGTTCTCAGTCCATGTGCGGCGTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAGCTGCCTGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAAGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTCGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGA | 597 | 50.59 | MEGSDSIITLSSTPPSQSPSSSSSPAPPPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCKELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 2301707 | 2303341 | + | Carg03259-RA | Car20g00407 | 168266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00407 | 198 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 134 | IPR004883 | - | |
| Car20g00407 | 198 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Car20g00407 | 198 | ProSiteProfiles | LOB domain profile. | 36 | 137 | IPR004883 | - | |
| Car20g00407 | 198 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Car20g00407 | 198 | Coils | Coil | 116 | 143 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01337 | Car-Chr4:7754472 | Car20g00407 | Car-Chr20:2301707 | 6.36E-75 | dispersed | |
| Car20g00407 | Car-Chr20:2301707 | Car02g00017 | Car-Chr2:178245 | 2.75E-51 | dispersed | |
| Car01g00485 | Car-Chr1:2847884 | Car20g00407 | Car-Chr20:2301707 | 9.02E-78 | wgd | |
| Car01g00485 | Car-Chr1:2847884 | Car20g00407 | Car-Chr20:2301707 | 9.02E-78 | wgd | |
| Car13g00164 | Car-Chr13:1477601 | Car20g00407 | Car-Chr20:2301707 | 1.75E-72 | wgd | |
| Car15g00405 | Car-Chr15:2108674 | Car20g00407 | Car-Chr20:2301707 | 1.78E-61 | wgd | |
| Car02g00632 | Car-Chr2:4759375 | Car20g00407 | Car-Chr20:2301707 | 2.64E-97 | wgd | |
| Car20g00407 | Car-Chr20:2301707 | Car04g00252 | Car-Chr4:1433576 | 2.64E-80 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5357 | PF03195 | LOB | 2.60E-41 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00407 | - | - | csv:101215067 | 295.434 |