Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00416 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCCATGGAAATTGTGAAGAGGGTCGCTGCAATTGCTGTTTATCATCCTCAACTTCTTCTTGTTCCTCAAATTCTTCATCAACTCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTTACCTCATTGCCCAAGAAAGGAAATGCAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTGCCTCTGCCTCTCCCTTTTCCCCCATGAACATGGCCACTTTTGACCTCCAGCCCCAGATCCTCTGCAAGGTCATCAATGTCCACCTACTTGCTAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCACTGGCGTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATAGAGCTGCTGATGGAGATGGGAGCGGAGGGTCGCCTACTAGATCCACACCTCACATGTTCTGTAAAACACTCACAGCGTCCGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGTTGCCACTGCTTTCCCATGTTTTACTTTCGATTTTTCTCAAATGAAGCGAGATTATACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAGCATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTCGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGCGAAAATGGAGAGTTAAGGTTGGGAATAAGACGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAAATGATCTTACTCGTGTGGTGAAAGCAGTTTCCACCAAGAGCGCATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAATTTGTTGTATCTTGTCAGAAGTATGTGAAGAGCATCAACAATCCAGTGAACGTAGGCACAAGATTCAAAATGAGATTTGAGATGGACGATTCGCCAGAAAGGAGGTTTATCCATACACGAGCAAGATCAACGTGCTTTACTTCGTACAATGATTCTTATATACAAATATATTTATCAGTATTTGTTTCTTGCAGGTTTAATGGTGTAGTTGTCGGTATTGGTGACATGGATCCCTTTCGATGGCCGAACTCGAAATGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGCGTTTCGCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTAATGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATGGTATCGCCCTTTTACGGTTGTGATACCGCAAAACGCTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCAGGTGGAGTTGAAAAGCTTAATATAGATGATTATGTAACTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAGCCTAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACCCATTTCAATCACCGAACTCGAGCTTTTATCACATGGCGTCAAATGGCGCCCGAAACATGTATTACCCTCATCGTGATATTTACAGTACTGGCCAAGCTGCCATGATGAGCTCAAATGATATCAATTTTCCAAGAGAGAGTGCCTTGTCCAACCCATCAGCAAAAATGGAAAGGGCTAATTCTACTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGACGAAAACGTGAACGAGAACCGAACTGGCTGTAAACTTTTCGGCTTTTCCTTGACTACAGAAACTGCTACAAACATGCAAAGTTCAGGGAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTAGTGGGAAGAGCTATTGATCTCTCTAGACTGAATGGCTATACTGATCTGCTTTCTGAACTCGAACGCCTGTTTAGCATGGAAGGACTCTTAAAAGATCCCGATAAAGGATGGCGTGTATTGTACACCGACAACGAGAACGACGTAATGGTGGTCGGGGATTATCCATGGCATGATTTCTGCGATGCTGTTTCGAAAATCCACATATACACAGAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGATCAAGCTGCTTTGTGTATGGAAGCATCAAAATCGTCTTCAGTGGGCCAACCTGATTCATCTCCAACAGTAGTAAGAGTTTAA 2481 44.34 MEIDLNQTASEVGKNAYCHGNCEEGRCNCCLSSSTSSCSSNSSSTPASSSTYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQIASASPFSPMNMATFDLQPQILCKVINVHLLANKENDEVYTQLTLLPLPELLGTGVEGKELEELALNRAADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLVATAFPCFTFDFSQMKRDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLTRVVKAVSTKSAFDVFYNPRAYHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFIHTRARSTCFTSYNDSYIQIYLSVFVSCRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFNGRGGFMDFEDSVRSSKVLQGQENVGMVSPFYGCDTAKRSLEFEVRSSAQQNQASGGVEKLNIDDYVTSFTGFMESDRFLKVLQGQEICSLRPQTRKPEPSLGVWGKFNLSDNSFNPFQSPNSSFYHMASNGARNMYYPHRDIYSTGQAAMMSSNDINFPRESALSNPSAKMERANSTPPTLGSNMRNSKDENVNENRTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTEEEVEKMTNGVISDDTQSCLDQAALCMEASKSSSVGQPDSSPTVVRV 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2338120 2343521 - Carg03250-RA Car20g00416 168275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00416 826 Pfam AUX/IAA family 676 783 IPR033389 -
Car20g00416 826 MobiDBLite consensus disorder prediction 637 670 - -
Car20g00416 826 Pfam Auxin response factor 314 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car20g00416 826 ProSiteProfiles B3 DNA-binding domain profile. 170 289 IPR003340 GO:0003677
Car20g00416 826 MobiDBLite consensus disorder prediction 637 666 - -
Car20g00416 826 ProSiteProfiles PB1 domain profile. 698 780 IPR000270 GO:0005515
Car20g00416 826 Pfam B3 DNA binding domain 170 288 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01160 Car-Chr3:9254689 Car20g00416 Car-Chr20:2338120 6.94E-132 dispersed
Car07g00181 Car-Chr7:1040486 Car20g00416 Car-Chr20:2338120 5.67E-141 dispersed
Car20g00416 Car-Chr20:2338120 Car10g00012 Car-Chr10:62700 4.34E-29 dispersed
Car17g00567 Car-Chr17:5251553 Car20g00416 Car-Chr20:2338120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5358 PF02309 AUX_IAA 8.90E-08 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00416 - - csv:101212503 1368.6