Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00428 ATGGCCATGGCTATAGCTCATCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGACAGTACTGGGAAGTACGTTCGATACACTTCAGAGCAGGTGGAAGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAACCAAGTTCTCTTCGACGGCAGCAGCTCATCCGGGAGTGCCCAATTCTTTCCAACATAGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTAAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTTCAGAAACAAGTTTCACAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACCGATGCAAGCTGCGATTCTGTGGTCACCACTCCTCAGCCCTCTCGACGAGATGCTAATAACGCAGCTGGACTCCTTTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATATTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGTCTTCAAAGATTGCTGAGATCCTTAAAGATCGTCCTTCGTGGTTTCGTGATTGTCGGAGCCTCGAGGTTTTTACCATGTTTCCAGCTGGAAACGGTGGGACAATTGAACTTGTTTATACACAGGTTTGCGAGAGATCACTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGATCCATCATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCATTGCGGTACATTAGGCAAATAGCTCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTGGGCCGGCAACCTGCTGTTTTGCGAACTTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTTGCTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACTTATCCTGGGGGTGTTCTTTGTGCTAAGGCATCCATGCTACTCCAAAATGTTTCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACATCGCTCAGAATGGGCTGATTTCAACATTGATGCGTACTCTGCGGCAACCCTTAAAGCCAATTCATACGCATATCCTGGGATGAGACCCACGAGGTTTACTGGTAGCCAAATCATCATGCCACTTGGTCACACAATCGAGAATGAAGAGTTGCTTGAAGTAATTCGACTTGAGGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCCGTAGGAGCCTGTTCAGAACTCATTTTTGCACCTATTGATGAGATGTTTCCTGACGACGCCCCGTTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGATCAGTTGAGTATGATTGTTTCATATGA 1734 46.48 MAMAIAHHRESSSGSITRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNAAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLESSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVSPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIENEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRSVEYDCFI 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2406650 2411197 + Carg03238-RA Car20g00428 168287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00428 577 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Car20g00428 577 Coils Coil 80 121 - -
Car20g00428 577 ProSiteProfiles START domain profile. 262 355 IPR002913 GO:0008289
Car20g00428 577 Pfam START domain 165 260 IPR002913 GO:0008289
Car20g00428 577 Pfam START domain 262 344 IPR002913 GO:0008289
Car20g00428 577 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00641 Car20g00428 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00717 Car-Chr17:6541955 Car20g00428 Car-Chr20:2406650 0 dispersed
Car02g00641 Car-Chr2:4832170 Car20g00428 Car-Chr20:2406650 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5360 PF01852 START 5.80E-12 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00428 K09338 - csv:101215773 1082.01