Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00461 ATGCTTTCTCTGCGTTCATGCTACTGTTTACGCCCCATTACATTGCCTCATCCCCAATTCAAGAAACTCATCTTCTCCAACAAACCTCCCCCTTTCAAACCCATTTTTCAGAATTTTGTTTCAGCAATGTCTTCTCGTCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCGTCCAAAACCTAACTCTTCCCTGGCTTTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGTAGTTCAACCTCAACTTTGGATAATCATGGAGATCCTAATCCGGTTAAGTCCGAGGAAGCTGTAGATTTGGGGGAAACCAAGTTGCGTCAGGATGATGGTGGGAATTTTGGAGGCAAGATTGGGCCGGTTGCGAATAAGAAGTGCGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATCCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAAACATTTGCATGTTGGAATGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGGTTTGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATCGTCTGCAACATGTTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACCGTGTATCTTTTGGCGAATAAGATTGCTCCCGCGCACGAAGGGCTCGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCGTCACAATCCATGATGCGAAAGCCTGATGCTTTAACTATTACCAAAGTATTTGACTCATTTCGGCTGATCGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTGTATCTGATTAGATTGCTGCAGGTTATGTCTCGGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAAAACATTCAACACCCCCAGCGAACGTTCAATCTCCTCTAGAAGAGGGTGCTAAGATTGTAAAGCAGGTGTATTCTGTGCTCCCTGTTTATGATAAACTTGTCCCTGCGCTTCTTAATGGTGGTGTGTGGAGCCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGTTGGCAAAACCAACAAAGGGAGTCTCCGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAGCAGAAGATTTTGCCTTTTCAGATTCTGAGTACACGAGCTCGCAAGAACGTGGCCGTGAGCGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTGTATCTTGACGGTCAACCACTTATTCAGAAAGAACTTAGTGTTCGTCGAGAGCATCTCTATGATTCATTTATTGAAGAAGCTGGATATTTTCAATTTGCCACAGCAATAACAACAAGCGATCTTGAGGAAATACAAAAATTCCTTGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATCATCAAAACATTGAACCGGGATGCTACTTATGAACCTTCCAAGAGGTCACTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATTGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCAGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAACCTACTGAGGTTTGGGAGGTTAAAGCGGCAGACTTGACTATCAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCCAACAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGAAAGACAAAACTCCAGAGGAGGCTACATCGTCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACTCAACCACCAAAACAATCAAGATGACAATGATGAAGACTGA 2427 43.59 MLSLRSCYCLRPITLPHPQFKKLIFSNKPPPFKPIFQNFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPRPKPNSSLALESTPPVESQCGSSTSTLDNHGDPNPVKSEEAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTFACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQVMSRTKLRIGLAEQTLLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWSLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATSSEQVADMYNAQKLNHQNNQDDNDED 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2568334 2574338 - Carg03205-RA Car20g00461 168320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00461 808 ProSiteProfiles ATP-dependent DNA ligase family profile. 542 678 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car20g00461 808 MobiDBLite consensus disorder prediction 774 808 - -
Car20g00461 808 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 460 468 IPR016059 GO:0003909
Car20g00461 808 ProSitePatterns ATP-dependent DNA ligase signature 2. 614 640 IPR016059 GO:0003909
Car20g00461 808 MobiDBLite consensus disorder prediction 783 799 - -
Car20g00461 808 MobiDBLite consensus disorder prediction 87 113 - -
Car20g00461 808 Pfam ATP dependent DNA ligase domain 436 640 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car20g00461 808 Pfam ATP dependent DNA ligase C terminal region 665 776 IPR012309 GO:0003910|GO:0006281|GO:0006310
Car20g00461 808 MobiDBLite consensus disorder prediction 61 121 - -
Car20g00461 808 Pfam DNA ligase N terminus 190 369 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00670 Car-Chr5:4183324 Car20g00461 Car-Chr20:2568334 6.05E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00461 K10747 - csv:101213447 1419.45