Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00518 ATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCTGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGAAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTTCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGACATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTTGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAA 723 45.78 MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSSVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2857941 2861499 + Carg03148-RA Car20g00518 168377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00518 240 Coils Coil 239 240 - -
Car20g00518 240 Coils Coil 118 180 - -
Car20g00518 240 Pfam Helix-loop-helix DNA-binding domain 80 129 IPR011598 GO:0046983
Car20g00518 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00125 Car20g00518 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00876 Car-Chr4:5055759 Car20g00518 Car-Chr20:2857941 8.59E-82 dispersed
Car06g01144 Car-Chr6:8488235 Car20g00518 Car-Chr20:2857941 1.56E-40 dispersed
Car10g00175 Car-Chr10:835504 Car20g00518 Car-Chr20:2857941 6.68E-16 dispersed
Car11g00145 Car-Chr11:823608 Car20g00518 Car-Chr20:2857941 2.16E-14 dispersed
Car16g00858 Car-Chr16:6308245 Car20g00518 Car-Chr20:2857941 1.77E-92 dispersed
Car18g00302 Car-Chr18:1822087 Car20g00518 Car-Chr20:2857941 2.36E-59 wgd
Car02g00125 Car-Chr2:743743 Car20g00518 Car-Chr20:2857941 1.73E-140 wgd
Car20g00518 Car-Chr20:2857941 Car09g00840 Car-Chr9:5125159 2.09E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5367 PF00010 HLH 1.40E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00518 - - cmos:111449017 435.647