Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00523 ATGAAAACTATGCCTTTTATGGCTCTTAGAAGGAAGTTCTGTGAGAATATTGTGCAGGAATTCGTGCTACATCGATGCTACAGTTCTAAAGTCGACTTGAAGAAGCTTCGTCCAATGATTTTGAAGAGAATTCAAAATCGGGCTAATAACTGTCCTATAAAAGGTCTAATTCCAGTGGCACAGCAAGTCTTTGAAGCTAGGGCAATGCTTATTCATGGAGTTTCCACTCTTCTCAAAGCATTTCCGGTTGTCTCTTGCAAATTTTGTCCAGAAGTATATGTTGGTGAGAAAGGTCATCTGATACGAAGCTGCGGCGGTTACAAACGCGGGCCTAAAAATCAGGTTCATGAGTGGATCAGAGGTGGTTTGAATGATGTCCTTGTCTCAGTAGAAGCATTTCACCGCCATCACATGTTCGAAAAGGTTAATGAACATGATGAGAGGCTCAATTTTGAGCGTGTTCCAGCAGTTGTGGAACTCTGCTGGCAAGCTGGAGCCAATACAAATGATGAAAATCTGTCTTCAAGCACTTGGAATTCAGTTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGCTCAGGCAGGGATGAACCTTTATCCGGTAATGAGATGAGGCTTTTGGCAACCGAAACTCTCAGGGCGTGGGAAACGGTTCGAACGGGCGTGCAGAAACTGTTAATGGTATATCCTACTAAGATCTGTAAATACTGCTCAGACGTTCATGTTGGGCCATCAGTACACCAAGCTAGACCATGTGGAGTTTTCAAATGTGAGAGTTGGCGAGGATCCCACTTCTGGGAGAAGGCGGATGTAGATGATTTAGTTCCTCTGAAGATCGTATGGCATCGGCGACCTCAAGATCCTCCCGTGCTCGTTGATGAAGGGAGGGATTATTACGGGCAATCGCCAGCAGTCCTGGCTCTTTGCACACAGGCTGGTGCCATTGCACCACCTAAGTATCATTGTATGATGAAAGTTCAAGGCTTACCACCACCTCAGAGTCACCTCAAGCTATGA 1014 45.96 MKTMPFMALRRKFCENIVQEFVLHRCYSSKVDLKKLRPMILKRIQNRANNCPIKGLIPVAQQVFEARAMLIHGVSTLLKAFPVVSCKFCPEVYVGEKGHLIRSCGGYKRGPKNQVHEWIRGGLNDVLVSVEAFHRHHMFEKVNEHDERLNFERVPAVVELCWQAGANTNDENLSSSTWNSVGGGGGGGGGGSGRDEPLSGNEMRLLATETLRAWETVRTGVQKLLMVYPTKICKYCSDVHVGPSVHQARPCGVFKCESWRGSHFWEKADVDDLVPLKIVWHRRPQDPPVLVDEGRDYYGQSPAVLALCTQAGAIAPPKYHCMMKVQGLPPPQSHLKL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2885267 2887895 - Carg03143-RA Car20g00523 168382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00523 337 Pfam APO RNA-binding 206 313 IPR023342 GO:0003723
Car20g00523 337 Pfam APO RNA-binding 29 167 IPR023342 GO:0003723
Car20g00523 337 MobiDBLite consensus disorder prediction 172 199 - -
Car20g00523 337 ProSiteProfiles APO domain profile. 85 170 IPR023342 GO:0003723
Car20g00523 337 ProSiteProfiles APO domain profile. 232 317 IPR023342 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00133 Car20g00523 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00012 Car-Chr11:53243 Car20g00523 Car-Chr20:2885267 5.00E-48 dispersed
Car20g00523 Car-Chr20:2885267 Car02g00133 Car-Chr2:772945 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00523 - - csv:101213873 545.428