Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00526 ATGCCCGCCGGAATTATGACACCGGCGAGAAACATGCTGTCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGTCTCTACTTCTGGCCTTGTTCTTTCTCAGTCAAGCATGATGGACGGTCAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCTAAAAGCGATCTTGCTCGAATCCGGGACGATGACTTCGATAGTGCCACGAAATCGGATAGCGATAATAACCATGAACTCGTCTCCGGTGATGACCAAGATCCTCGTCCTAAAAAGAAGCGGTACCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGTATTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTGAACTTGGAGCCTTTACAAGTTAAGTTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACCCAACTCCGAACAGAAAATGAGAAGCTTCGAGCCGATAACATGAGATATAGAGAAGCCCTTAGCAATGCCTCATGTCCCAATTGCGGCGGCCCTACTGCCATTGGTGAAATGTCTTTTGACGAACATCATCTTAGACTCGAAAACGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCCATTGCTGCGAAGTACGTAGGCAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCAGTTCCATCTCGACCACTAGAGCTGGGAATGGGCAACTTCGGACCACAACCCGGCCTTGGAGGAGACATCCATGCCTCCCCTGGTGACCTGATCCGATCAATCAGCGGCCCGATCGAGGCCGATAAGCCCATGATCATCGAGCTTGCAGTTGCAGCCATGGAAGAGCTAACTAGAATGGCTCAGATGGGTGAGCCATTGTGGATGACTAGCCTGGATGGTTCGACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCTGCAGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCCGTTGTCATCATGAACCACATTAACCTCGTGGAGATTCTCATGGACGTGAATCAATGGTCGACTCTATTTTCTGGAATTGTGTCTAGAGCTATGACGCTTGAAGTATTATCCACCGGAGTTGCTGGAAATTACAATGGAGCTCTACAAGTGATGACGTCCGAGTTTCAAGTTCCATCGCCACTAGTCCCGACCCGAGAGAGCTACTATGTTCGATATTGCAAGCAGCACGGGGACGGGTCATGGGCAGTGGTGGACGTTTCATTGGACGATCTGCGCCCTACCCCCGGAGTTAGATGTAGAAGAAGACCTTCTGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTCGAGCATGTTGAGGTGGACGATAGAGGGGTTCATAATCTTTACAAGCAGCTGGTGAGCTCCGGCCAAGCTTTTGGGGCCAAACGGTGGGTTACAACCTTAGATCGCCAATGTGAACGGCTTGCCAGCGCCATGGCCACCAATATTTCCACCGGTGATGTTGGAGTTATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTAGCTGAGAGAATGGTGATAAGCTTCTGCGCTGGAGTGAGCGCCTCCACAACCCACACATGGACTACTCTGTCCGGTACTGGTGCCGACGATGTTCGAGTCATGACCCGAAAGAGCATCGACGACCCCGGTAGACCTCCGGGTATTGTCTTGAGTGCTGCAACTTCCTTCTGGCTTCCTGTTCCGCCCAAAACAATCTTCGATTTCCTCCGAGATGAAAATTCTCGTAGCGAGTGGGACATTCTTTCCAATGGCGGAGTCGTTCAAGAAATGGCCCATATCGCCAATGGCCGCGACACTGGCAATTGCGTTTCTCTCTTACGCGTAAACAGCATGAATTCGAGCCAAAGCAACATGTTGATCCTGCAAGAAAGCTGCACGGACCCAACAGTGTCGTTCGTCATCTACGCACCGGTTGACATAGTAGCAATGAACGTCGTCCTCAACGGCGGAGATCCCGACTACGTAGCGCTTCTCCCCTCAGGGTTCGCCATTCTCCCCGATGGCGGCGGAGGAGAGGGTGTGTCCGGTGGGTCGTTGCTGACAGTTGCATTTCAGATACTGGTGGATTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTTGCAACGGTTAACAATCTGATTGCGTGTACGGTGGAGAGAATTAAAGCGTCATTATCATGTGAGGCTGCGTGA 2268 50.0 MPAGIMTPARNMLSMIGRNGNNVGGFVSTSGLVLSQSSMMDGQLLPLDMPQNTSKSDLARIRDDDFDSATKSDSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEVFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIHASPGDLIRSISGPIEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPAGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGSWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNISTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKTIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSMNSSQSNMLILQESCTDPTVSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2899070 2903924 + Carg03140-RA Car20g00526 168385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00526 755 Coils Coil 143 175 - -
Car20g00526 755 Pfam START domain 283 502 IPR002913 GO:0008289
Car20g00526 755 Pfam Homeodomain 92 148 IPR001356 GO:0003677
Car20g00526 755 ProSiteProfiles START domain profile. 273 505 IPR002913 GO:0008289
Car20g00526 755 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Car20g00526 755 MobiDBLite consensus disorder prediction 66 100 - -
Car20g00526 755 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Car20g00526 755 MobiDBLite consensus disorder prediction 66 91 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00719 Car20g00526 CCT
Car11g01520 Car20g00526 CCT
Car19g00719 Car20g00526 ECH
Car11g01520 Car20g00526 ECH
Car02g00137 Car20g00526 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00584 Car-Chr13:7664985 Car20g00526 Car-Chr20:2899070 0 dispersed
Car11g01520 Car-Chr11:12241544 Car20g00526 Car-Chr20:2899070 0 wgd
Car19g00719 Car-Chr19:8221874 Car20g00526 Car-Chr20:2899070 0 wgd
Car02g00137 Car-Chr2:798512 Car20g00526 Car-Chr20:2899070 0 wgd
Car20g00526 Car-Chr20:2899070 Car03g00472 Car-Chr3:5043138 0 wgd
Car20g00526 Car-Chr20:2899070 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5371 PF01852 START 1.60E-59 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00526 K09338 - csv:101214763 1416.36