Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00529 ATGAAGGTGTTTTGGATTAGGAGTGGCCATTGGGTCAGAACCATAGCTTTGATCTTTGCATTGTTCTTTGAGATATGGATGCCTTTGGGAGTGATTGGTATTGGTGTCTCTCAAAACACAAACGTTTCTTCTTCGAATCCGGGGGTGTTGAACGTTGGAGTTCTGTTCACTCTTGATTCAGTCATTGGAAGGTCGGCACAGCCTGCGATTTTAGCTGCGGTGGACGATGTCAATGCCGATAACAGTGTTCTTCCTGGAACAAAGCTGAAGTTGATCTTACACGACACGAACTGCAGTGGATTTCTTGGAACAGTGGAAGCCATGCAGATGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCTTCAGGCATTGCTCATGTCATTTCCCATGTTATTAATGAACTCCATATACCTCTTCTATCATTTGGAGCTACAGATCCCACTTTATCTGCACTGCAATACCCGTATTTCGTTCGGACGACACAGAGTGATCACTTCCAGATGAACGCCATTGCTGATATGGTAGATTATTTCGGATGGAGAGAGGTGATTGCCATCTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGTGACGCCTTGGCAAAGAAACGAGCCAGGATCTCTTATAAGGCTGCTTTCTCTCCTGGATCCCCCAATAGCGTAATAAGTGAATTGTTGGTTTCAATAAACCTGATGGAATCTCGGGTGTATATCGTACATGTCAATCCCGACACTGGTTTATCAGTATTTTCATTAGCTAAGAAACTTCAGATGATGAGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATATCATGAATCATTTACAGGGCGTTGTAGCTCTTCGTCACCACACCCCGGACAGCGATCTGAAGAAAAATTTTGTCTCCAAATGGAAAGGACTGAAGTATAAGAAGAGTTCAAGCTTCAACTCTTATGCACTCTACGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACGTTTCTTAAAGAAGGTGGACATATATCCTTTTCTACTGACCCCAAGCTACGTGAAAACAATGGTAGCATACTGCACTTAAAATCACTTCGAGTTTTTAATGGCGGCGAACAACTCTTACAGACAATCAAGAGAACGAACTTCACGGGTGTAAGTGGACGAATTCAGTTTGGTGATGACAGAAATTTGATTCATCCAGCTTATGATATCCTCAACATTGGGGGTACTGGTACTCGTAGAATCGGTTACTGGTCGAATCATTCGGGTTTATCAACTATTGCACCAGAGAATCTGTATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGTGAAGTAACGAGCGTTCCTCGAGGATGGGTGTTCCCGCACAACGGGAAATCATTGCAAATTGTAGTACCTAACCGTGTGAGCTACAAAGCGTTTGTATCTAAAGACAAGAACCCTCCAGGGGTTAAAGGGTATTGTATAGATGTCTTTGAAGCTGCCTTAAACTTGTTGCCTTATCCAGTTCCTCGCACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAGCCATTTATGGAGTCGGGACTCGTTGTCGTTACCGTCGTCAACGAGGAGAAATCCAGTCCGTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCCATATTCTTCATTTTCGTTGGAGCTGTTGTCTGGATTCTCGAGCACCGGACCAACGAAGAGTTCCGTGGTCCGCCAAGGCAACAACTCATTACAATATTCTGGTTTAGTTTCTCGACAATGTTCTTCTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGCTGGTGCTGATAATATGGCTCTTCGTCGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACATCAAAGATCGAAGGGATTGATAGCTTAATCTCTGGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTAATGAGCTGAGTATAGCAGCTTCTAGGATCGTTAAACTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGGCGTGGACCGGGGAATGGCGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACGTCGAGCTTTTCTTGGCCGGGACGAATTGCATATTCAGGACGGTTGGACAGGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCAAAGAGACTCTCCTCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCGGAGAACGGCGATCTTCAAAAGATCCACGACAAATGGCTGTCACGAACCGAGTGTTCAATGAGCCTAAACCAAGTCGACGTAAACCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATATGTGGCATTGCCTGCTTTATTGCTCTTTCCATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCCGAAACCCAGCCTGAAGTCGAGGACATCGAACCTGTTAGGACGAGACGCCTTAGTCGTACTACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAGCTTAAAAGAAAAGCCAGTGAGAACAAACAAGCTAGCCAGAGCTCAGAGGCCCACCTTGATTCACCACCTTGA 2817 44.12 MKVFWIRSGHWVRTIALIFALFFEIWMPLGVIGIGVSQNTNVSSSNPGVLNVGVLFTLDSVIGRSAQPAILAAVDDVNADNSVLPGTKLKLILHDTNCSGFLGTVEAMQMMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDHFQMNAIADMVDYFGWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPNSVISELLVSINLMESRVYIVHVNPDTGLSVFSLAKKLQMMSSGYVWIATDWLPSFLDSFETNSPDIMNHLQGVVALRHHTPDSDLKKNFVSKWKGLKYKKSSSFNSYALYAYDSVWLAARALDTFLKEGGHISFSTDPKLRENNGSILHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGTRRIGYWSNHSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTSVPRGWVFPHNGKSLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAALNLLPYPVPRTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISGTDAIGVQEGSFALNYLINELSIAASRIVKLKNQEEYADALRRGPGNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFIALSIFFFRVLFQYRRFTPETQPEVEDIEPVRTRRLSRTTSFMHFVDKKEAEIKGKLKRKASENKQASQSSEAHLDSPP 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2910769 2916331 - Carg03137-RA Car20g00529 168388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00529 938 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Car20g00529 938 PIRSF IGluLR_plant 15 937 IPR017103 -
Car20g00529 938 SUPERFAMILY Periplasmic binding protein-like II 460 826 - -
Car20g00529 938 MobiDBLite consensus disorder prediction 912 938 - -
Car20g00529 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 79 - -
Car20g00529 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 123 151 - -
Car20g00529 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 336 348 - -
Car20g00529 938 Gene3D - 478 593 - -
Car20g00529 938 Gene3D - 594 734 - -
Car20g00529 938 Gene3D - 69 413 - -
Car20g00529 938 PANTHER GLUTAMATE RECEPTOR 3.4 35 920 - -
Car20g00529 938 Gene3D - 778 832 - -
Car20g00529 938 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Car20g00529 938 CDD PBP1_GABAb_receptor_plant 51 439 IPR044440 -
Car20g00529 938 Pfam Receptor family ligand binding region 67 422 IPR001828 -
Car20g00529 938 Pfam Bacterial extracellular solute-binding proteins, family 3 494 826 IPR001638 -
Car20g00529 938 CDD GluR_Plant 482 825 - -
Car20g00529 938 SUPERFAMILY Periplasmic binding protein-like I 44 476 IPR028082 -
Car20g00529 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 920 - -
Car20g00529 938 Gene3D - 165 438 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00140 Car20g00529 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01595 Car-Chr1:13172205 Car20g00529 Car-Chr20:2910769 0 dispersed
Car03g00575 Car-Chr3:5494318 Car20g00529 Car-Chr20:2910769 0 dispersed
Car07g00334 Car-Chr7:1677154 Car20g00529 Car-Chr20:2910769 0 dispersed
Car09g00032 Car-Chr9:157713 Car20g00529 Car-Chr20:2910769 0 dispersed
Car11g01418 Car-Chr11:11594571 Car20g00529 Car-Chr20:2910769 0 dispersed
Car19g00619 Car-Chr19:7642635 Car20g00529 Car-Chr20:2910769 0 dispersed
Car20g00529 Car-Chr20:2910769 Car20g00530 Car-Chr20:2921825 7.25E-49 tandem
Car11g01517 Car-Chr11:12219952 Car20g00529 Car-Chr20:2910769 0 wgd
Car02g00139 Car-Chr2:810503 Car20g00529 Car-Chr20:2910769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00529 K05387 - csv:101215485 1687.16