Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00544 ATGGACTGGACTAGACGCCACGTCATCGGCCGCGGCTCCTCCGCCACCGTCTTCCTTGCCACGGATTCTTCCTCCGGCGACGTTTTCGCCGTCAAATCCGCTGAGATTTCACACTCGCAATCTCTACAAACTGAGCAACGGTTTCTGTCTTCTTTAGCCTCTCCGTACGTAGTTTCTTATAAAGGGTGTGAGGTCCGGAGAGAACAGAGTGGGGTCGTGATGTTCAATCTTTTCATGGAGTATTTGCCCAACGGTTCGCTTGCCGACGTAATTCGCCGCCGTGGAGGACGGCGGCTCGACGAGGCGGCAATCGGAATTTACACGCGGCAGTTACTACAAGGCCTACAGTACATTCATTCCAAAGGCTTGGTGCATTGCGACATTAAATCCCGAAACGTTTTGATCGGTCGAGACGGTGAGGCTAAATTGGCCGATTTCGGGTGCGCCAAGTGGGCAAGCCAAACAGACTCAATTGGCGGCACGCCGCTGTTTATGGCACCAGAAGTGGCTCGTGGAGAGCACCAAGGGCTACCCTCTGACATTTGGTCCATTGGGTGTACGGTCATCGAAATGGCCACCGGCGGCGGCTCACCCTGGCCGAAAACAACCAGTGACACCGACCCAATTTCCGCTCTGTACCGAATTGGGTATTCCGGCGAGTCGCCGGTAATTCCATCCTGTTTATCCCACCAAGCAAAGGATTTTGTAGAGAAGTGCTTAAGAATGAATCCAAATGAGAGATGGACAGCCAATCAGCTTCTAAATCACCCATTTGCGGGGGAATTCACTTCATCCCCAAAGAAAATCCATGAAGTTCATTCGAATTCTCCAACGAGTATTCTAGAACAGGGCGTTTGGAGATCCATTGAAGAAAGTGAAATCAGAGAAGCCAAATCGTGTAGACCCAATAGTTGGGCAGCAGAGCAGATCCGACGGCTGTGGATGGCCTCAGGAGAGCCGAGCTGGAGAGATGATGAGAACTGGATTACAATTCGAAGACAGGACATTGGAAAAAGCAAAGAAGTCGGTGACGAAGGCGACACGATTGGTGGGTCAGAAGTGAAAGGCTGTAGTAATAATTGTTGGGGTGAGAAACAGAGTGGCGGTGGCGGCAAGGAGTGGTCGGAAACGGAATTCACACAGAATAACGGTGGCTTTAGCTGCAGAATTAGTAGGAATGATTTGGCAGACCATCGTTACTACTAA 1206 51.0 MDWTRRHVIGRGSSATVFLATDSSSGDVFAVKSAEISHSQSLQTEQRFLSSLASPYVVSYKGCEVRREQSGVVMFNLFMEYLPNGSLADVIRRRGGRRLDEAAIGIYTRQLLQGLQYIHSKGLVHCDIKSRNVLIGRDGEAKLADFGCAKWASQTDSIGGTPLFMAPEVARGEHQGLPSDIWSIGCTVIEMATGGGSPWPKTTSDTDPISALYRIGYSGESPVIPSCLSHQAKDFVEKCLRMNPNERWTANQLLNHPFAGEFTSSPKKIHEVHSNSPTSILEQGVWRSIEESEIREAKSCRPNSWAAEQIRRLWMASGEPSWRDDENWITIRRQDIGKSKEVGDEGDTIGGSEVKGCSNNCWGEKQSGGGGKEWSETEFTQNNGGFSCRISRNDLADHRYY 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2991302 2994055 - Carg03122-RA Car20g00544 168403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00544 401 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car20g00544 401 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00544 401 Pfam Protein kinase domain 5 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00544 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01503 Car20g00544 CCT
Car19g00708 Car20g00544 CCT
Car19g00708 Car20g00544 ECH
Car11g01503 Car20g00544 ECH
Car02g00150 Car20g00544 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00618 Car-Chr1:3627290 Car20g00544 Car-Chr20:2991302 2.13E-65 dispersed
Car07g00694 Car-Chr7:3562953 Car20g00544 Car-Chr20:2991302 4.48E-67 dispersed
Car11g01503 Car-Chr11:12119711 Car20g00544 Car-Chr20:2991302 4.05E-128 wgd
Car19g00708 Car-Chr19:8148277 Car20g00544 Car-Chr20:2991302 2.99E-127 wgd
Car02g00150 Car-Chr2:851898 Car20g00544 Car-Chr20:2991302 0 wgd
Car20g00544 Car-Chr20:2991302 Car03g00496 Car-Chr3:5114316 1.25E-90 wgd
Car20g00544 Car-Chr20:2991302 Car07g00274 Car-Chr7:1447122 1.04E-95 wgd
Car20g00544 Car-Chr20:2991302 Car09g00877 Car-Chr9:5372008 8.45E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89613 PF00069 Pkinase 6.00E-56 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00544 K20716 - csv:101208274 578.556