Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00552 ATGCCAAATTTGCCTCCCAAATTCCCAAACTTCAACACTCCAAATCCCCCTGCACACGACCACTTCCTTTCCTTCTCGTCCCCTCGACAAAGTCTCCACCATCGCTCCATTAGCGACTCGATCGCCTTCCTCGAAACGCCGACGATGAATCAAACCATTTTAGGCTCGGCTGCACTATCCAACAATAATGCATTTGATGTGTTTGATGAAGATGATCAGCCAACTTCTTCCAAGGCACATAATGATGGAATCATTGACTCGAAACGAGTCAAGAGAATCTTGGCAAACAGACAATCTGCACGAAGATCACGGGTGAGAAAGCTGCAATATATTACAGAACTGGAACAGAGTATCAGTACATTACAGGCCGAAGTTTCAATGTTGTCACCACGAGTAGCATTTCTAGATCAACAACGACTGCTTCTAAACGTGGACAATAGTGCTTTGAAGCAAAGAATCGCCTCCCTCTCCCAAGACAACATTTTCAAAGAT 492 44.72 MPNLPPKFPNFNTPNPPAHDHFLSFSSPRQSLHHRSISDSIAFLETPTMNQTILGSAALSNNNAFDVFDEDDQPTSSKAHNDGIIDSKRVKRILANRQSARRSRVRKLQYITELEQSISTLQAEVSMLSPRVAFLDQQRLLLNVDNSALKQRIASLSQDNIFKD 164
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 3049457 3050111 - Carg03114-RA Car20g00552 168411
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car20g00552 164 MobiDBLite consensus disorder prediction 1 20 - -
Car20g00552 164 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Car20g00552 164 Pfam bZIP transcription factor 88 135 IPR004827 GO:0003700|GO:0006355
Car20g00552 164 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 138 IPR004827 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car11g01492 Car20g00552 CCT
Car11g01492 Car20g00552 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00552 Car-Chr20:3049457 Car06g00794 Car-Chr6:6127469 9.29E-17 dispersed
Car11g01492 Car-Chr11:12037042 Car20g00552 Car-Chr20:3049457 5.27E-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5374 PF00170 bZIP_1 6.00E-10 CL0018 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00552 - - csv:105434687 195.667