Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car20g00552 | ATGCCAAATTTGCCTCCCAAATTCCCAAACTTCAACACTCCAAATCCCCCTGCACACGACCACTTCCTTTCCTTCTCGTCCCCTCGACAAAGTCTCCACCATCGCTCCATTAGCGACTCGATCGCCTTCCTCGAAACGCCGACGATGAATCAAACCATTTTAGGCTCGGCTGCACTATCCAACAATAATGCATTTGATGTGTTTGATGAAGATGATCAGCCAACTTCTTCCAAGGCACATAATGATGGAATCATTGACTCGAAACGAGTCAAGAGAATCTTGGCAAACAGACAATCTGCACGAAGATCACGGGTGAGAAAGCTGCAATATATTACAGAACTGGAACAGAGTATCAGTACATTACAGGCCGAAGTTTCAATGTTGTCACCACGAGTAGCATTTCTAGATCAACAACGACTGCTTCTAAACGTGGACAATAGTGCTTTGAAGCAAAGAATCGCCTCCCTCTCCCAAGACAACATTTTCAAAGAT | 492 | 44.72 | MPNLPPKFPNFNTPNPPAHDHFLSFSSPRQSLHHRSISDSIAFLETPTMNQTILGSAALSNNNAFDVFDEDDQPTSSKAHNDGIIDSKRVKRILANRQSARRSRVRKLQYITELEQSISTLQAEVSMLSPRVAFLDQQRLLLNVDNSALKQRIASLSQDNIFKD | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3049457 | 3050111 | - | Carg03114-RA | Car20g00552 | 168411 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car20g00552 | 164 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Car20g00552 | 164 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 91 | 106 | IPR004827 | GO:0003700|GO:0006355 | |
Car20g00552 | 164 | Pfam | bZIP transcription factor | 88 | 135 | IPR004827 | GO:0003700|GO:0006355 | |
Car20g00552 | 164 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 86 | 138 | IPR004827 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g01492 | Car20g00552 | CCT | |
Car11g01492 | Car20g00552 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car20g00552 | Car-Chr20:3049457 | Car06g00794 | Car-Chr6:6127469 | 9.29E-17 | dispersed | |
Car11g01492 | Car-Chr11:12037042 | Car20g00552 | Car-Chr20:3049457 | 5.27E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5374 | PF00170 | bZIP_1 | 6.00E-10 | CL0018 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car20g00552 | - | - | csv:105434687 | 195.667 |