Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00557 ATGCCGAAGGGTTTGAAGAGTAAATGTCATTCTACGTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGATCTTCAAGGGATATTCACTAATCTTCAAAATGCACGAAAGGAGAGTCGTACTACTGATATTGCTGTCTTGGAGGAGCAAGTCCATCAAATGCTTAGGGAGTGGAATGCTGAGCTTAATGAACCCTCACCTTCCTCTTCATTTGTTGAGGGTAGTCTTGGATCGTTCTCGCAAGAACTAGCCCATCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACAATGGCTGAACCAAAGACTGAGCCTGAACTCCATTGCGTTCTTGCCAGCAAACCGTCAAATTTTGTTCAGGATAGTTTTGGTTTTCCGGAGCTCCAACAGCATAGTTTTCTAGGATTTGAAGAGTGCCAAGTCTCTTCTCCAGTTCTACAGAATTATTCATTTTACAAATCTGACATGGCTACTCAGCCTAATTGTCAAAGTTTCGAAGTAGATAAAAACTTTGAGCAGAACACGATAGTCAGTAAGGATGATGTGTCTACTTTGGATTGCCATGCATTGAATTCACATCAAGAATTCGACTATGGGGTTCTTGTTGGGCCATATGATGCGGGAGACTTTAGTCAGGACACAAAGTCCGGTATTCTCCCAACTATCTCACCCCCACCGTCTGCTTTTATGGGCCCGATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCCAAATGGTGCCTGGACTATTGCAGTAGTTGTCATTCTGTTCTTGCAATGAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGAGGCATTGGCTTAAAGGATGGTCCATTGTTTGCTGCTCTTCGTGCAAAGACACGGACCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCCCCATGGAATGCTCCTGAGCTTTTTGATATTTCGTTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGACGGGCCTTTGAGAGTGGCAATCGAAAGCAAAGGTCATTGCCAGATTATAATGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATACGATATCACAGATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAACTTATTAAAGCTAAGAGTACGAGTACGACGATGGCGAATAATAAGGCTGATAATGTAAGTATCAATCTTTCTCCACATAATCAGAATATGTCTAACACTAACTGA 1464 43.72 MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLREWNAELNEPSPSSSFVEGSLGSFSQELAHLLEHCDEQDDATSTMAEPKTEPELHCVLASKPSNFVQDSFGFPELQQHSFLGFEECQVSSPVLQNYSFYKSDMATQPNCQSFEVDKNFEQNTIVSKDDVSTLDCHALNSHQEFDYGVLVGPYDAGDFSQDTKSGILPTISPPPSAFMGPICALWDCFRPAQGSKWCLDYCSSCHSVLAMNEGLPGMTPILRPGGIGLKDGPLFAALRAKTRTKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITDYDSFALYRLELKHADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQLIKAKSTSTTMANNKADNVSINLSPHNQNMSNTN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3061332 3064410 - Carg03109-RA Car20g00557 168416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00557 487 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00557 - - - csv:101211467 835.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01162 Car-Chr3:9272624 Car20g00557 Car-Chr20:3061332 3.00E-177 dispersed
Car20g00557 Car-Chr20:3061332 Car07g00603 Car-Chr7:3049951 0 wgd
Car20g00557 Car-Chr20:3061332 Car07g00179 Car-Chr7:1027515 4.31E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g218 . . Bda06g00389 . . . . . . . Cma02g00196 Cma20g00581 . Car20g00557 . . . . . . . . . . . . . . . . . . Cone10ag1260 . . . . Chy11g00658 . . . . . . . . Bma12g00825 . Cmo02g00199 Cmo20g00652 . . . . Cpe16g00412 Cpe05g01419 Bhi10g01369 Tan05g0925 . . Hepe08g0429 . . . . . . . . . . . . Cme11g00861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car07g00179 CST 2 482 VOZ-9 Transcription Factor Family AT1G28520 70.4 2.6e-198 688.7
Car03g01162 CST 2 492 VOZ-9 Transcription Factor Family AT1G28520 69.0 1.1e-193 673.3
Car20g00557 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.2 2.4e-135 479.6
Car07g00603 . 6 422 VOZ-9 Transcription Factor Family AT1G28520 58.0 3.6e-131 465.7
Car07g00179 CST 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.3 1.3e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5375 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00557 Car_Chr20 FPKM 1.84973 1.387902 2.049332 1.917252 17.80105 18.003735 19.173435 0.0 0.0 0.0