Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00562 ATGGACCCTGAAATCCTTGCTGAATTCTCCGTTAGTGGCAGTGAGGAATCGGAGGTCAATGCATCGGTGAGTTTAGAAAAATTCGACGACAATTCAAAGGTTGATAATAGAGGTGATGAAGAGAAGGATTTGGATTCCAGATCTTGTGCTCATCAAGGGGATCAAGAGATTGTGAGTAAAAGAGATGAATCAGCCACGCCAAGAGATATTGTTGGAGTCAACGATTTGGTGAAACATGGTGACAAGATTAAGAACAGGAAGTCTTCTTCTCAATCAAAAAATTCTCAAGGGAAGAGGAAAGTTAAGGTGGATTGGACGCCGGAGCTGCACCGGCGGTTTGTGCAAGCGGTGGAGCAGCTGGGAGTGGATAAGGCGGTGCCTTCTCGAATATTGGAGCTTATGGGAATTGAGTGTCTCACTCGCCATAACGTTGCTAGCCATCTTCAAAAGTATAGGTCGCATCGGAAACATTTGCTGGCACGTGAAGCGGAGGCGGCGAGTTGGAGCCAAAGGCGGCAGATGTATGGCTCGGCGTCGGGCGGTAACGCCGGGAAGAGAGAGCTCAGCCCTTGGAGTGCACCCACCATGGGATTTCCGCCCATGACGCCCATGCATCCTCATTTTAGGCCATTACATGTGTGGGGTCATCCCACGGTGGATCAATCTCTAATGCACGTATGGCCAAAGCATCTCCCACATTCACCATCTCCGCCACCTCCTCCGACCACCCCGCCATCTTCATGGCCACACGCCGCCGCTCCTCCTCCGCCCCCTGACTGGCACCACCACCACCACCACCAACGGGTTCCAAACGCCTTAACCCCAAGAACGCCGTGCTTCCCACAGCCAATTCCGACCACGAGATTTGGTGGGGCAGCGTTCTCGGTAATTCCACCGCCACATCCGATGTACAAAGTAGAGCCCACGACCACCGTCGGCCGTTCTCCCACCCACCTTCCTCTGGACTCTTATCCATCCAAAGAGAGCATAGACTCAGCTATTGGAGATGCTTTAACCAAGCCATGGCTGCCACTTCCCCTCGGCCTAAAGCCTCCGTCTTTGGACAGTGTCAAAGTCGAGCTCCAACGACAAGGCATTCCTAAAATACCACCCACCTGTGCTTGA 1125 52.71 MDPEILAEFSVSGSEESEVNASVSLEKFDDNSKVDNRGDEEKDLDSRSCAHQGDQEIVSKRDESATPRDIVGVNDLVKHGDKIKNRKSSSQSKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIECLTRHNVASHLQKYRSHRKHLLAREAEAASWSQRRQMYGSASGGNAGKRELSPWSAPTMGFPPMTPMHPHFRPLHVWGHPTVDQSLMHVWPKHLPHSPSPPPPPTTPPSSWPHAAAPPPPPDWHHHHHHQRVPNALTPRTPCFPQPIPTTRFGGAAFSVIPPPHPMYKVEPTTTVGRSPTHLPLDSYPSKESIDSAIGDALTKPWLPLPLGLKPPSLDSVKVELQRQGIPKIPPTCA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3091599 3094493 + Carg03104-RA Car20g00562 168421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00562 374 Pfam Myb-like DNA-binding domain 103 152 IPR001005 -
Car20g00562 374 MobiDBLite consensus disorder prediction 175 194 - -
Car20g00562 374 MobiDBLite consensus disorder prediction 228 280 - -
Car20g00562 374 MobiDBLite consensus disorder prediction 13 27 - -
Car20g00562 374 MobiDBLite consensus disorder prediction 28 88 - -
Car20g00562 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 156 IPR017930 -
Car20g00562 374 MobiDBLite consensus disorder prediction 1 102 - -
Car20g00562 374 MobiDBLite consensus disorder prediction 231 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00562 Car-Chr20:3091599 Car09g00371 Car-Chr9:2032866 2.81E-18 dispersed
Car20g00562 Car-Chr20:3091599 Car07g00611 Car-Chr7:3082204 9.38E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5377 PF00249 Myb_DNA-binding 1.80E-08 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00562 - - csv:101212135 534.258