Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00575 ATGCAAGCTTCTCAGCTTCATAGAAATTCACATATGTCGAAGAGGCTATGTTATCAGCCAATTCAAGGAGCGGATACCTACTGTTTCTCCCAATTATGTTCTAGTGCTGGCAACCAAAGAGCTCAGCTCAATGTTGAGGACATTGGTGATCGGTACTGCACTCTGGAGTCGTCCTCAGGTAGCCAAGGCTACGCAGCTCACAACTCGACGTCGACTGTCACTTTCTCATCCAATGGGAGTACAATATCTCAACAGGATTCTAGTTCGAATCCCTCTGATCAGCATAATTCCATTGATTATGCATATGGCTCCCCTGTAAGCGGATCCAGCATAACAGATGATCTTAGTGATTTTAGGCACAAATTAAGGGAATTGGAAAGTGTAATGCTTGGCCCTGATTCTGATGTTATTGATAATTTTGATAGTATCTTCCAGGAGGGAACTGAGAATCCAGAGATGGGAACTTGGGGGCAAGTGATGGATGTTATCACCAAAGGAAGCTTAAAAAAGATCCTAATAGCTTGTGCTAAAGCTGTATCAGATAACGATGCGTTGATGGCGCAATGGCTGATGGATGAATTGCGTAAGATGGTTTCGGTTTGCGGTGAACCGATGCAGCGATTGGGAGCGTATATGCTTGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCACGAGCCGAGCTCCTCTCGTATATGCACATTCTTTACGAGGTTTGCCCATACTTCAAATTCGGATACATGTCAGCCAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAAGCAGGCCTGGTCGACCGCCTCACATTCGTATAACCGGTATAGATGATCCTGCCTCGGCTTATGCTCGTGGAGGCGGGCTAGACATCGTTGGTAGGAGGCTTTCCAAGTTAGCAAAATTGTATAATGTGCCATTTGAGTTTCACTCCGCTGCCATTTCTGGCTGCGACGTTCAGCAAAAAAACTTAAGCATCCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCGTTCATGCTACACCATATGCCAGACGAGAGCGTAAGCACCGAAAATCACCGAGATAGACTATTGAGGCTGGTTAAGGGTCTGTCCCCAAAGGTAGTGACAGTCGTCGAACAAGAATCCAACACGAACACCGCTGCATTCTATCCCCGGTTCATCGAAACGCTGGATTACTACAACGCCATGTTCGAATCAATCGACGTTACTCTTCCAAGACAACACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCAAGGGAAGTTGTGAACATACTAGCATGCGAAGGGGCCGAAAGAGTGGAACGACACGAGCTACTCGGAAAATGGAGACTCCGATTCGCAATGGCAGGATTTACAGCTTACCCATTAAGCTCTTTGGTTAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGATTGAAGAGAGAGAAGGGGCTCTGTATCTAGGCTGGATGGATAGGGATTTGGTCGCTTCCTGTGCATGGAAGTGA 1617 45.76 MQASQLHRNSHMSKRLCYQPIQGADTYCFSQLCSSAGNQRAQLNVEDIGDRYCTLESSSGSQGYAAHNSTSTVTFSSNGSTISQQDSSSNPSDQHNSIDYAYGSPVSGSSITDDLSDFRHKLRELESVMLGPDSDVIDNFDSIFQEGTENPEMGTWGQVMDVITKGSLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASRPGRPPHIRITGIDDPASAYARGGGLDIVGRRLSKLAKLYNVPFEFHSAAISGCDVQQKNLSIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNRYRIEEREGALYLGWMDRDLVASCAWK 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3226120 3227736 - Carg16095-RA Car20g00575 168434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00575 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Car20g00575 538 MobiDBLite consensus disorder prediction 75 105 - -
Car20g00575 538 Pfam GRAS domain family 168 538 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00889 Car-Chr1:8233682 Car20g00575 Car-Chr20:3226120 1.45E-155 dispersed
Car03g00543 Car-Chr3:5340762 Car20g00575 Car-Chr20:3226120 0 dispersed
Car06g00255 Car-Chr6:1446580 Car20g00575 Car-Chr20:3226120 1.19E-72 dispersed
Car06g00589 Car-Chr6:3394239 Car20g00575 Car-Chr20:3226120 0 dispersed
Car07g00301 Car-Chr7:1552894 Car20g00575 Car-Chr20:3226120 1.18E-164 dispersed
Car09g00985 Car-Chr9:6331139 Car20g00575 Car-Chr20:3226120 2.06E-149 dispersed
Car14g00115 Car-Chr14:563954 Car20g00575 Car-Chr20:3226120 1.04E-69 dispersed
Car16g00572 Car-Chr16:3613089 Car20g00575 Car-Chr20:3226120 1.15E-176 dispersed
Car16g00908 Car-Chr16:7434890 Car20g00575 Car-Chr20:3226120 0 wgd
Car20g00575 Car-Chr20:3226120 Car07g00624 Car-Chr7:3142947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5378 PF03514 GRAS 9.50E-136 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00575 - - csv:101221914 963.37