Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00576 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTGCCCAAGCTCTCAAGGTGCTTGCTGAGGATGTCTGTGAGCTGCAAGTTTTCTACCTCCAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCGAAGGAGTATCTGTGTTTGTTAAATTCCACCGGAAAATGGAAGAAGAGGCTTCTCTGTCTTTGGATTCTTGCTCTACTTATACTCTTGAGCTGTTGGTTTCCCTTGCGTTCGTATAATGTAAATAGTGGCACAAAACAGAAGACCTCGTACTTGTTCGACGAAGAAACTCGAACTTTTCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGAATCAGATCGGATATCCGGGTGCACCAATCATTTTGGACCTGACACATCAGAGTTGGATGGAATTGGCTGTGCTCAGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGAAGAAAGTGCAGATTCCAATGTTGGGCGGTGCCCAGTTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACGTAACTGTTCCATTTGCTACAGACTTATCCATCTCTTTACTTTCAAATGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGACTGCTAAGATGCCTTATAAGAAAGCACTGGAAGATTTTCTGTAGTTTATTGATTGGATGTTTTTGGGTTCTTCTTGGTCTGGTAGTGTTCCAGAAAGTATCTGGTTTCCATCTAAAATTGTGGAACAAGAAACATCCAAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTAAGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGCGCTGGTAAATGGCGGAAGGTGCTCTTAAGAATATTTATCGTAGTTGGGATCGTCGGGTCCAGTTGGTTATTTTGGTACCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAACGTTAGCATGAACCATGTTCATGCATTGGCTGTTCTTACCTCTACTTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGAAAACATTTGGTGAATATACAGAAAGAACCGCCTTTGAAAGACCGCTGACTAGCGGTGTAGCTTATGCTCTGAAAGTTAATCACTCAGAAAGAGAGAAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACTGATGACCAAACTCTTGTTCAAGATTGTGATCCAGAAAATTTGGACCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTCGCGCATATAGTTTCTATCGACATGATGTCGGGAAAAGAGGACCGTGAGAACATCTTGCGAGCTAGGGCGTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTTGTTCTCACATTTGCTGTCTATAACACTGACCTCCCACCAGACGCTACTCCCGAGCAACGTATTGAAGCTACTGTTGGCTATCTAGGTGCATCATACGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCAATCAACATGTACGGTTCTGATTTTACCGATACCGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACGGCTATCAATTCATCAGTTGGCGTCCTAATCATTACCTTGTTGGTTGGCCATATATTTCATGCAGCAATAAGTCGGATTGCAAAAGTGGAGAATGACTATCACGAGATGATGGGGCTTAAAAGTCGCGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTCAAGTTACTGATGGACACTAACCTTGATTCAAAGCAACTGGATTTTGCCCAGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTCATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTGCCCTTCGATCTGCGTGCTATACTTGATAATGTGATCTCACCTTTTTCTCTCAAATCTAATGACAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCACTCAAGTTTACTCATAAAAATGGACATATATTAGTCTCGGTGCATCTGGCTGACGAGGTGAGAGGTCCAGTTGATTTTATGGACATTGTTCTTAAACAAGGCACATATGTAGTTGGAGATACATCAAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAAAAATTCAAAAAGTTCAGCAGGACGGATGCGGTGGAGGAACCCAAAACAATTAGAATACTCGTGACCGTAGAGGATACAGGTGTAGGAATTCCCCATGATGCACAAAACCGAGTATTCATGCCTTTTATGCAGGCAGATAGTTCCACATCTCGGACGTATGGTGGCACGGGAATAGGATTGAGTATTAGCAAACATTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATTGGTAGCACATTTTCTTTTACGGTTTCTTTCCAGAAAGGGGAAATTAGTTCTTTGGATACCAGACAGCCACACTGTGATCTGGGTGTTGTCGATTTCCAGGGGCTAAGAGCGTTAATAATTGATAATAGCTGCGTTCGAGCAGAGGTCACGAGATATCATCTTCAGAGGCTGGGGATTTCTGTTGATATTACTCTGAGTGCAGAGTCTGCTTATCAGTATCTATCCAATGCCTCCAACACGAGAGCATCAACACAACTGGCCATGATTCTTATAGACAAAGACATTTGGGACAAGAAAGAGGGTCTCAATTTCCATCTTTTGTTTAAAGAGCATGTGAATGGTCCAAAACTCTTTCTCTTGGCATCCCCCAAAAGCTCCAATGAGCAATATGAACTTAAATCTTCTGGTCATGTAAATAATGTGTTAAGTAAGCCTCTTCAGTTAAACGTGTTGGTCAGTTGCTTCCGCGACGTCTTCGGGATCGAGAAGAGGAATCAAGTAATTATTAAACGACCATCGACTCTTGGAAATCTGCTGAAAGGAAAGCATATCCTGGTTGTGGATGACAATGCTGTAAACAGAAAGGTGGCCGAAGGCGCCCTAAAGAAATATGGAGCTGTTGTAACTTGTGTAGAACGTGGAACGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACGGGTCCGTGCTGTAGAAAGTGGCGTGAACGCGAAAATTTCATCTGGGGAAGTGTCGAATGAGGATAATAAGGTCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTCGAAGAGGAGCAGCTTTATTCGACTGTAGCACGTTTTCTTGAAACTGCTTGA 3753 43.01 MWRGCSGGAGVLPKLSRCLLRMSVSCKFSTSNGKFPAGFKLKKAKEYLCLLNSTGKWKKRLLCLWILALLILLSCWFPLRSYNVNSGTKQKTSYLFDEETRTFLRHFNVSKNQLQALASLLSESDRISGCTNHFGPDTSELDGIGCAQRLLYWEQDLHKQYVWVEESADSNVGRCPVRTEKIPENSDQLFSEDVTVPFATDLSISLLSNGNQLCGKIIEQAGLLRCLIRKHWKIFCSLLIGCFWVLLGLVVFQKVSGFHLKLWNKKHPKPNQPLVHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIVGSSWLFWYLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREKFEMMHGWTIKKMETDDQTLVQDCDPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHEMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVISPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSLKFTHKNGHILVSVHLADEVRGPVDFMDIVLKQGTYVVGDTSNNSCTTFSGLPVVDRWKSWEKFKKFSRTDAVEEPKTIRILVTVEDTGVGIPHDAQNRVFMPFMQADSSTSRTYGGTGIGLSISKHLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISSLDTRQPHCDLGVVDFQGLRALIIDNSCVRAEVTRYHLQRLGISVDITLSAESAYQYLSNASNTRASTQLAMILIDKDIWDKKEGLNFHLLFKEHVNGPKLFLLASPKSSNEQYELKSSGHVNNVLSKPLQLNVLVSCFRDVFGIEKRNQVIIKRPSTLGNLLKGKHILVVDDNAVNRKVAEGALKKYGAVVTCVERGTDAVALLNPPHNFDACFMDLQMPEMDGYEATRRVRAVESGVNAKISSGEVSNEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGYVAKPFEEEQLYSTVARFLETA 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3233680 3243407 - Carg16096-RA Car20g00576 168435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00576 1250 ProSiteProfiles Response regulatory domain profile. 1112 1247 IPR001789 GO:0000160
Car20g00576 1250 ProSiteProfiles CHASE domain profile. 372 596 IPR006189 -
Car20g00576 1250 Pfam His Kinase A (phospho-acceptor) domain 657 722 IPR003661 GO:0000155|GO:0007165
Car20g00576 1250 Pfam CHASE domain 375 569 IPR006189 -
Car20g00576 1250 Pfam Response regulator receiver domain 1113 1243 IPR001789 GO:0000160
Car20g00576 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 769 939 IPR003594 -
Car20g00576 1250 ProSiteProfiles Response regulatory domain profile. 965 1088 IPR001789 GO:0000160
Car20g00576 1250 ProSiteProfiles Histidine kinase domain profile. 664 941 IPR005467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01298 Car-Chr1:11683969 Car20g00576 Car-Chr20:3233680 2.17E-52 dispersed
Car06g00101 Car-Chr6:666546 Car20g00576 Car-Chr20:3233680 6.72E-16 dispersed
Car15g00833 Car-Chr15:4772091 Car20g00576 Car-Chr20:3233680 0 dispersed
Car16g01173 Car-Chr16:9965169 Car20g00576 Car-Chr20:3233680 1.79E-15 dispersed
Car17g01329 Car-Chr17:9961941 Car20g00576 Car-Chr20:3233680 0 dispersed
Car11g01462 Car-Chr11:11820524 Car20g00576 Car-Chr20:3233680 0 wgd
Car20g00576 Car-Chr20:3233680 Car07g00626 Car-Chr7:3153535 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5379 PF03924 CHASE 6.60E-35 CL0165 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00576 K14489 - csv:101221294 2181.76