Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00598 ATGGGGAATCATTGTTCCAACCCATCTCTCCATAGGAGTAACGACAACAAACAAAACATTGATAGGCATTCCCGAGCTGAGATGGGATCGTTCAGCGAGAGAACCATACTTGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGCATAGTTCGTCATTGGGTGGTGGTTCGCAGAAACTTTGTTATGGCAACATGAAGAACAGGGTATTTCACAGCCTTAAGGTTGTCGTCTTCTCTGCTAAGATCAACTTTCTCATGCCTTTTGGGCCATTAGCAATATTAGTCAGCAGTTTGACTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAACGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTACGAAGAGGAATGATACGTGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAACATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCATCTGCTACTGTAAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTTCTTCGTTCCACACATACAGAGTTGCACTCTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGATAAGAACTTATATCTCCCCGTTACTGAGGAGGATACTGAAGAGAGTTTGGATGACGAAGACGCCCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTTTATCTTGACCATTTGGATCTCCGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGCCATGAACATACCGGTGGCGTTCATTAGCGTTATCCTACTACCCATTGTTGGGAATGCGGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCGTCCACACAGATATCGATGTTCGGGGATGGAACTTCCAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTCGTACATGTTGATCCAGCGTCATTTCAGAAATTTCTCTCTGGTGGTTCTGAGTATTTCGGAGTAGCTTTGGGGTTTTGCTGTTTCTCTACTCGGAGCTTAGATACCAACGTTGAAATGTCGAGTCGGGCTGATATGGGAAGGGATCGGTATCGGAAGGATTATACGTCGAGATATGATGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGGTCGGAAATTTGTCTCATGCTATAGTGGAGCGCGATCTAACTCGCTACTTTTCACAGTTTGGTGAGCTCGATAGAATTGCTTTCCAGCCCAATCGGAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATGGAAGCCATGAGAGAGCTTCAAGGTTTTGCTATTGGAGGGAATCCCATTAAAATTGAGTTTGCCAAGGCGGATAAGCCATCTGCATCATCACGCGATGAAGACTATTCTCAACACCGAGAGGAAAAATCTTATGGAGCGAAGGGTTCCTTCTCTCAGGGACGACATGCTAGTCCTGACTATTCTCAACACCGACATGCTAGTCCTGAAAAGTCCAAAATAAGCGATAAAAATACAGAGCCCAGTGAAGTGTTATGGATAGGATTTCCGGCCTTAATAAAAGTGGATGAAACGATATTAAGGAAGGCCTTTTCACCATTTGGGGAAATTGAGAAGATTACAACATTCCCTGGTCGAACATATGCTTTTGTTCGTTTTCGGGTTGTGTCATCAGCTTGGAGGGCTAAAGAGACTCTACAGGGGAAGCTATTTGGAAATCCCCGAGTACACATTTGTTTTGCAAGAAGTGATTCTGGTTCATCAAACGGTGGAAGGAGCTCATCGAATGCACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAATTTTGATTCTGGAGAATTTGATTCCCGTGGTCTTAATAGGAAAAGTAATTTATGGACTAGTGAGAACAATGCGTTTGAAATGAAGAGGTCTGGAGAATTCTCATCAAAATTAGGTCCATCCGAAGATAGATATGAACATGGTAGTCCAACAAAAGAGAGAGGTCCTCATTTAAATAACTTTCCTCAAAGATTTTCTCAACCTCCATTTTATGAAGATCCATGGGACTTACCAGAGGATACGAGCTTGTATCAAGGGTCCAAGAAATTGAAGATTGGATCCTTTCCCCAGGATAAAGAGCTCCCTGAGTACCCATTATCTGATTTGGAACAAGATAAACGTATCATTCGAAAGTCATACACTGATTTTTCCTCCTCAGAAACATTTGATCATACGATGAAGTCTGGGCCACCTCTGGGGTATAAACAGACTCCTGATCGGCCTATAACAATGTCAGTCCCTTATGATCGGCCTATAACAATGTCAGTCCCGTATGATCGGCCTATAACAAAGTCAGTCCCTTATGAAGAAAAGAGTGAACACTGGAGGGAACCATATGATAATTTTCAGGTTCCTGAGTCTCTGCCACCCAATGCTGTTGCAAGGAAAAGGTTCTCTCCTGATTCAGAACGGTCATCTATAAAAGAGTGGAAATGGGAGGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCTCGCTGCTTTCCTGTGGGAGAGGTTCTGGATATGCTATTGCCAGAGTTCTTAGATTGTACTGCAAAAACTGGTCTAGACATGCTCTCAAAGCATTACTATGAAGCAGCCAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATGCTGACATCGTATTCTACAATGAATTCATGAACTATCTTGGTGAAAAGCAACGAGCAGCAGTTGCCAAGTTGGATGACAGAACCACCATGTTTCTTGTTCCGCCATCCGAGTTTTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGAGTTGTTCTGAGGTTAGAGCGTGCTGGTACGAGCGCAAGGCCTCCTCCATATCAAAACGAAACGAAGGACGCAAGCTTGTTACCTTTACATAGTGAAACGTTATATACCAACTTACAGACGTCTCCAGCTGTTTTTGCCCCAGTATCATCTTTATCCTATCTCAGTAAAGCAGGAATCAATCATACATCATTGCCTAGGAATGTCGCTACTTCAGCGTCGCCCGTGTTATTTCATGGCTCAGGGCAGTCTGTTGGAAGTTTGTCTGATCCATATATTGAGAACAGGCATGAGTATCCAATTCAACAGCAGCAAAATGCCAATGGACCGAACCCAACTCACCATCTACAAAACTCGATGTTCGATACTCGAAATACTCCATCACAAGCTTTGAACAATTCAATGGATCCTGTTATTCAGGAACGTCATTTAATCATTCCAAGGGAAATTCAGGAAACAGGCTCCAGTAATTATACCGTTGGAATTTCTTCTGTTACATCTGGAAATGCTTTATTATCTACTCAACATGAAATAAACCCGGCAGCCTCTTTGGCTACAACTCTTTCCTCCCTACCGCCAGACCAACTGGCACAATTAGCATCATCTCTGCTTGGGCATCAAAGGCAACCGGGGAGTATGCCAAATGCAACCATGGCTGAAGAATTGAGGCATCGGAACGAATCGGTTGTGCCATTGGGAAGGTCCCAAAATGGCTCTTTCCAGACTAATCTGATGAACTCTGAGCCTCAGACATCTCAAATTGTTCAAGTTCAACTGATGCAGCAGCATGTACAACAACACCAGATGTCAAACATGCCTGCAGGGCAACTTATGGCACAGAGGGAGCTTCAGATGGAGGCTTTAGGCAATGATCAACAGGTTCAAAACTCCGATGTTCGTGGCGAAGCAGAAGCAGAAGCAGATCCGCAGAAACGCCTGCAAGCTACACTTAAGCTGGCAGCTGCTCTTCTCCAGCAAATTCAACAAGGAAAGGGAAGTTGA 4128 43.65 MGNHCSNPSLHRSNDNKQNIDRHSRAEMGSFSERTILEFEDESLVSPVSLNRKNFSIEHSSSLGGGSQKLCYGNMKNRVFHSLKVVVFSAKINFLMPFGPLAILVSSLTGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVTEEDTEESLDDEDAPEISMWESIIWLFILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGDGTSNYLKGLMLILCYLIVAASFFVHVDPASFQKFLSGGSEYFGVALGFCCFSTRSLDTNVEMSSRADMGRDRYRKDYTSRYDEKSQSGHSNSSNPPSRHLWVGNLSHAIVERDLTRYFSQFGELDRIAFQPNRSYAFINFRRDEDAMEAMRELQGFAIGGNPIKIEFAKADKPSASSRDEDYSQHREEKSYGAKGSFSQGRHASPDYSQHRHASPEKSKISDKNTEPSEVLWIGFPALIKVDETILRKAFSPFGEIEKITTFPGRTYAFVRFRVVSSAWRAKETLQGKLFGNPRVHICFARSDSGSSNGGRSSSNAPLSPRSPHLFSNFDSGEFDSRGLNRKSNLWTSENNAFEMKRSGEFSSKLGPSEDRYEHGSPTKERGPHLNNFPQRFSQPPFYEDPWDLPEDTSLYQGSKKLKIGSFPQDKELPEYPLSDLEQDKRIIRKSYTDFSSSETFDHTMKSGPPLGYKQTPDRPITMSVPYDRPITMSVPYDRPITKSVPYEEKSEHWREPYDNFQVPESLPPNAVARKRFSPDSERSSIKEWKWEGTIAKGGTPVCRARCFPVGEVLDMLLPEFLDCTAKTGLDMLSKHYYEAASAWVVFFVPESDADIVFYNEFMNYLGEKQRAAVAKLDDRTTMFLVPPSEFSEKVLKVPGKLSISGVVLRLERAGTSARPPPYQNETKDASLLPLHSETLYTNLQTSPAVFAPVSSLSYLSKAGINHTSLPRNVATSASPVLFHGSGQSVGSLSDPYIENRHEYPIQQQQNANGPNPTHHLQNSMFDTRNTPSQALNNSMDPVIQERHLIIPREIQETGSSNYTVGISSVTSGNALLSTQHEINPAASLATTLSSLPPDQLAQLASSLLGHQRQPGSMPNATMAEELRHRNESVVPLGRSQNGSFQTNLMNSEPQTSQIVQVQLMQQHVQQHQMSNMPAGQLMAQRELQMEALGNDQQVQNSDVRGEAEAEADPQKRLQATLKLAAALLQQIQQGKGS 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3361033 3377675 - Carg16118-RA Car20g00598 168457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00598 1375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 482 546 IPR000504 GO:0003723
Car20g00598 1375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 623 676 IPR000504 GO:0003723
Car20g00598 1375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 480 552 IPR000504 GO:0003723
Car20g00598 1375 MobiDBLite consensus disorder prediction 683 704 - -
Car20g00598 1375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 610 684 IPR000504 GO:0003723
Car20g00598 1375 MobiDBLite consensus disorder prediction 587 605 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 466 480 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 552 605 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 745 762 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 461 480 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 553 574 - -
Car20g00598 1375 Pfam SPOC domain 921 1036 IPR012921 -
Car20g00598 1375 MobiDBLite consensus disorder prediction 1 21 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 739 781 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 835 857 - -
Car20g00598 1375 MobiDBLite consensus disorder prediction 1333 1353 - -
Car20g00598 1375 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016021|GO:0055085
Car20g00598 1375 Pfam Sodium/calcium exchanger protein 302 388 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00205 Car-Chr6:1201779 Car20g00598 Car-Chr20:3361033 1.12E-89 dispersed
Car06g00609 Car-Chr6:3537668 Car20g00598 Car-Chr20:3361033 5.73E-122 dispersed
Car07g01042 Car-Chr7:6032943 Car20g00598 Car-Chr20:3361033 3.00E-91 dispersed
Car08g00176 Car-Chr8:1075443 Car20g00598 Car-Chr20:3361033 9.59E-06 dispersed
Car14g00828 Car-Chr14:4866299 Car20g00598 Car-Chr20:3361033 3.19E-06 dispersed
Car14g01084 Car-Chr14:9526489 Car20g00598 Car-Chr20:3361033 2.65E-163 dispersed
Car17g00575 Car-Chr17:5451484 Car20g00598 Car-Chr20:3361033 2.80E-06 dispersed
Car02g00199 Car-Chr2:1195676 Car20g00598 Car-Chr20:3361033 0 transposed
Car02g00198 Car-Chr2:1184818 Car20g00598 Car-Chr20:3361033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00598 - - cmos:111448578 1818.9