Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00602 ATGGGTTTCATGTGTGATTTTTGTGGGGCTCAAAAGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCACTCGGCTAACGCCTTGTCGAAGCGTCATACAAGAACGCTGTTGTGTGAAAAATGCCATACGCAACCCGCTGTGGCGAGATGTATTGATGAGAGGATTTCTTTGTGTCAAAATTGTGACTGGACGGGCCATGGCACATCTACCTCAGCTTCATCGTCACACAAGAGACAAGCCATTAATTGCTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGGAAATGATGCTTGTGAGACAGAGTTGGGATTGATGAGCATTGCGGAGACCGACTTGACGGGCGCTGGTCAAAGAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCACTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAAGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTGTTTTAATTCGAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAGGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 1230 47.4 MGFMCDFCGAQKSMVYCRSDAACLCLSCDRNVHSANALSKRHTRTLLCEKCHTQPAVARCIDERISLCQNCDWTGHGTSTSASSSHKRQAINCYSGCPSAAELSSIWSFVLDVPSGNDACETELGLMSIAETDLTGAGQRMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKFCCPGTKVAGFFGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTESSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAGEAYDCDPLNRTRSC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3391655 3396927 + Carg16122-RA Car20g00602 168461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00602 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car20g00602 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Car20g00602 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00129 Car20g00602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01272 Car-Chr14:10914125 Car20g00602 Car-Chr20:3391655 9.51E-14 dispersed
Car20g00520 Car-Chr20:2865389 Car20g00602 Car-Chr20:3391655 5.51E-63 dispersed
Car18g00911 Car-Chr18:9921462 Car20g00602 Car-Chr20:3391655 3.25E-30 transposed
Car11g01444 Car-Chr11:11731118 Car20g00602 Car-Chr20:3391655 1.26E-178 wgd
Car19g00649 Car-Chr19:7815952 Car20g00602 Car-Chr20:3391655 1.14E-180 wgd
Car20g00602 Car-Chr20:3391655 Car07g00641 Car-Chr7:3251437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5381 PF06203 CCT 4.60E-16 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00602 - - csv:101216401 698.353