Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00604 | ATGGCAGAGTGTGGCAGAAGAGACAGAAAGCTAACCAGGGTTAGAGAACGTGGGTTAGTCTTCTTCAGAGCCGGAGAGAATGTTGGGTTTCTCTCTGTTTCCTTAGCTGTTCTTTCTTCTCTTTCTCCTGCAATGAAATTATCAGATATCAACAAAAGGATCAATCTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATCTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCATATTTCAAACAACCTTATGGGTCTGTCCAGCCTTCCTGCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCGATATCTATCTTCAAAGGCATAGTTCGGTCGATTCTCCATGTCGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCACCAGATTCCATGGAGAATGCTCCCGAATCCATAGAATTCCATCTTAACCCGAATGGAAGTTACATTGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTCGAACATGACTGCTCGGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGA | 738 | 44.85 | MAECGRRDRKLTRVRERGLVFFRAGENVGFLSVSLAVLSSLSPAMKLSDINKRINLQNRLNSELRSDFLYILLIFFDSSELIPVLHISNNLMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3399356 | 3400797 | + | Carg16124-RA | Car20g00604 | 168463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00604 | 245 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 231 | IPR001841 | - | |
| Car20g00604 | 245 | Pfam | Ring finger domain | 188 | 231 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car17g00414 | Car-Chr17:2753942 | Car20g00604 | Car-Chr20:3399356 | 7.48E-14 | dispersed | |
| Car18g00696 | Car-Chr18:8185083 | Car20g00604 | Car-Chr20:3399356 | 1.46E-06 | dispersed | |
| Car19g00652 | Car-Chr19:7829713 | Car20g00604 | Car-Chr20:3399356 | 6.11E-70 | dispersed | |
| Car20g00604 | Car-Chr20:3399356 | Car15g01120 | Car-Chr15:8843502 | 1.25E-13 | dispersed | |
| Car20g00604 | Car-Chr20:3399356 | Car07g00640 | Car-Chr7:3246844 | 5.26E-97 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00604 | K16285 | - | csv:101216645 | 300.056 |