Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00615 ATGCGCTTCTCAAATATCCACTCTGGTTTGAGGCTCTCCAATTCGATTTCAACCATCAAAGAAGCATCATCTTCCGGAAAATGGCAAGAAGCTCTCCAACTTTACCGCGAAATCAGAGTCTCCGGATCTAAATTTCCAGACTCCTCGGTGCTCCCTTCGATTCTCAAAGCATGTTCCAACGTTTCTTTCAAACTTGGAACCGCTATGCACGGATGTCTGATCAAACAAGGATGCCAATCTTCCACTTCCGTTGCAAATTCCACTATCGACTTGTATATGAAATGGGGCGATTTGGATTCCGCACACCGCGCTTTTGTTTCTCTGAAGAACAAGGATTCGGTGTCTTGGAACGTGATGGTTCATGGGAATTTCTCAAATGGAGGCGTAATGGCAGGCTTGTGGTGGTTTAAAATGGCCAGATTCGTCAATTTTCAGCCCAATGTTTCTTCGTTGGTACTTGTAATTCAGGCATTTCGTGAGCGTAAATCATATAGTGAAGGCTTTGCGGCTCATGGTTATATAATTCGCTCTGGTTTCTCTGCCATTCTTTCGGTTCAAAACTCCCTGTTGAGCTTATATACTGAAGTTGATATGTTTCTTGCCCACAAACTGTTCGATGAAATGTCTGTGAGAAATGATATTGTTTCCTGGAGTGTGATGACAGGAGGCTTCGTGCAAATTGGGGAAGACGAACATGGGTTGCTGATGTTTCGAGATATGGTGGCAGAGGCTGGCATTTCACCTGATGGGGTAACCATTAATATCGTCTCGTGGAATTCGATGTTGTCGGCGTATGCCCTCAATGAGAAGCCTTTGGAAGCTGTGGCGTTGCTTAGGACAATGGTGGAAGAAGGAGTTGAGAAAGATGAGGTGACTTTTGTGAATGTTCTTCAGATAGTTAAGCATTTTCTTGATTCGTTACAATGCAGGTCTGTCCACAGTGCGATTATACGACGAGGATATGAATCGAACGAGTTGGTGATGAACTCTGTGATTGATGCTTATGCGAAATGCAATCTGATTGATCTTGCAGGCATACTTTTTGATGGAATGAAGAAGAAAGATGTAGTTACTTGGAGCACCATGATTGCAGGCTTTGCCTACAATGGCGATCCCAACAAAGCGATATCGATCTTCAAGCGAATGAATGAAGAGGTGAAACCGAACAAGGTATCGATTATGAATCTTATGGAGGCTTGTGCTGTCTCTGCTGAATCGAGACGATCGAAATGGGCTCACGGTATAGCTGTTAGAAGAGGTTTGGCTAGTGAAGTAGCTGTTGGGACTGCCATTATTGACATGTACTCAAAATGTGGAGATATAGCAGCCTCCATTAGAGCCTTCAACCAAATCCCAGAAAAGAATGTCGTCTGTTGGAGCGCTATGATATCTGCCTTCGGCATCAACGGTCTCGCTCACGAAGCCTTACTTTTGTTCGTAAAAATGAAACAATACGACATGAAGCCGAATGCTGTGACCGCCCTGTCATTGCTGTCTGCTTGTAGCCATGGAGGACTAGTGGAGGAAGGGCTCTCTTTTTTCACATCCATGGCGAAGAAACACGAAATTACACCTGGTTTGGAGCATTACTCATGCGTGATCGACATGTTAGCTCGAGCGGGGAAATTCAAAGACGCATTAGAGTTGATTGAGAAGATGCCTGAAGAAATGGAAGCAGGGGCCAGCATTTGGGGGACACTATTGAGCTCTTGTAGGAGCTATGGAAACATTGTGCTTGGCTCGGGAGCGGCCTCTCGTGTTCTTGAACTCGAACCGTTGAACTCGACTGGCTACATGCTTGCGTCGAACTTGTATGCGAACTGCGGGCTAATGAGTGATTCTGCAAAGATGAGGAGGTTGGCAAAAGAGAGAGGAGTCAAGGTTGTTGCTGGATACAGTTTGGTGCATATTAACTCACAGAGTTGGAGATTTGTTGCTGGTGATGAGTTCAATCCAAGAGCTGATGAGATCTATTTAATGGTTGAACAATTGCACAGTGTAATGAAGATTGATTATTTGAAAGTTTTAGATGCTATTCAAATGGACGTATTTGATTTGATGTAG 2064 44.28 MRFSNIHSGLRLSNSISTIKEASSSGKWQEALQLYREIRVSGSKFPDSSVLPSILKACSNVSFKLGTAMHGCLIKQGCQSSTSVANSTIDLYMKWGDLDSAHRAFVSLKNKDSVSWNVMVHGNFSNGGVMAGLWWFKMARFVNFQPNVSSLVLVIQAFRERKSYSEGFAAHGYIIRSGFSAILSVQNSLLSLYTEVDMFLAHKLFDEMSVRNDIVSWSVMTGGFVQIGEDEHGLLMFRDMVAEAGISPDGVTINIVSWNSMLSAYALNEKPLEAVALLRTMVEEGVEKDEVTFVNVLQIVKHFLDSLQCRSVHSAIIRRGYESNELVMNSVIDAYAKCNLIDLAGILFDGMKKKDVVTWSTMIAGFAYNGDPNKAISIFKRMNEEVKPNKVSIMNLMEACAVSAESRRSKWAHGIAVRRGLASEVAVGTAIIDMYSKCGDIAASIRAFNQIPEKNVVCWSAMISAFGINGLAHEALLLFVKMKQYDMKPNAVTALSLLSACSHGGLVEEGLSFFTSMAKKHEITPGLEHYSCVIDMLARAGKFKDALELIEKMPEEMEAGASIWGTLLSSCRSYGNIVLGSGAASRVLELEPLNSTGYMLASNLYANCGLMSDSAKMRRLAKERGVKVVAGYSLVHINSQSWRFVAGDEFNPRADEIYLMVEQLHSVMKIDYLKVLDAIQMDVFDLM 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3447151 3449659 + Carg16135-RA Car20g00615 168474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00615 687 Pfam PPR repeat family 454 502 IPR002885 -
Car20g00615 687 Pfam PPR repeat family 254 297 IPR002885 -
Car20g00615 687 Pfam PPR repeat 357 384 IPR002885 -
Car20g00615 687 Pfam PPR repeat 215 241 IPR002885 -
Car20g00615 687 Pfam PPR repeat 328 356 IPR002885 -
Car20g00615 687 Pfam PPR repeat 529 555 IPR002885 -
Car20g00615 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Car20g00615 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 385 IPR002885 -
Car20g00615 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car20g00615 687 Pfam E motif 574 635 IPR046848 -
Car20g00615 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 556 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00615 - - - cpep:111776938 867.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00178 Car20g00615 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00615 Car-Chr20:3447151 Car08g00327 Car-Chr8:2105607 3.37E-41 dispersed
Car20g00615 Car-Chr20:3447151 Car17g00779 Car-Chr17:6873537 4.05E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00615 Car_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0