Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00616 ATGGATTCTCCTTCCCGTTCTCTGTTTCCCTTCACCGTTTTCCCCCATCCCTCTCCCTCCCATTCTTCCCTTCCGCCCCCCAATTCCCGCCGGAAGCGTACTAAGTTCATCAAACCCACCACCGCCGCCGCCCCTCTTCATTCTCCCTCCACTCCCAAGTCCAAGCACGCCAAGAAACCGGACCCTACCGCTCCCAAGATCACTCGCCCCTGTACTGAGTGCGGCAAGACGTTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCATCCTGAGCGTCAATGGCGAGGAATCAATCCGCCGCCGAATTTCCGCCGATCGACTGCCACTGACGAAGATCACGAAATCGCTGCCTGTTTGATTATGTTAGCGAATGGCCCTAATGCGATCGATCCAACTGAAGCGGTTACTGAAACGGATGGTGATTGTCGAGAAAATCAAGAATCGGCGGCGTTAGTGTTTGAACAGATAGGCAGCCGGAAGAACGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGATGATCATCATCATGGTTATTTGGACTTGAATTTGCCTCCTCCAATGGAAGACATTGAAGAACGTTCATCATCCTATTGTTCAGGGATTGTTTTGGATCTGAGATTAGGGCCTAATTAA 660 50.61 MDSPSRSLFPFTVFPHPSPSHSSLPPPNSRRKRTKFIKPTTAAAPLHSPSTPKSKHAKKPDPTAPKITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRRSTATDEDHEIAACLIMLANGPNAIDPTEAVTETDGDCRENQESAALVFEQIGSRKNVKEEEEEEEEEEEEDDDDDHHHGYLDLNLPPPMEDIEERSSSYCSGIVLDLRLGPN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3450662 3451321 - Carg16136-RA Car20g00616 168475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00616 219 Pfam C2H2-type zinc finger 70 93 - -
Car20g00616 219 Coils Coil 157 181 - -
Car20g00616 219 MobiDBLite consensus disorder prediction 155 204 - -
Car20g00616 219 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Car20g00616 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Car20g00616 219 MobiDBLite consensus disorder prediction 1 65 - -
Car20g00616 219 MobiDBLite consensus disorder prediction 167 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00616 - - - cmax:111484009 361.303
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car19g00610 Car20g00616 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00134 Car-Chr6:833056 Car20g00616 Car-Chr20:3450662 1.27E-10 dispersed
Car16g01207 Car-Chr16:10176194 Car20g00616 Car-Chr20:3450662 1.94E-11 dispersed
Car20g00616 Car-Chr20:3450662 Car10g00207 Car-Chr10:1001194 7.57E-08 dispersed
Car19g00610 Car-Chr19:7584838 Car20g00616 Car-Chr20:3450662 1.39E-34 wgd
Car20g00616 Car-Chr20:3450662 Car03g00581 Car-Chr3:5520871 3.25E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g284 . . Bda06g00439 . Bpe07g00672 . . Bma12g00878 Cmo19g00814 . . . . Car20g00616 Sed08g2863 . Cpe15g00638 Bhi05g01589 Tan02g0583 Cmetu11g2392 . Hepe02g0374 . . Cla02g00353 Cam02g0362 Cec02g0363 Cco02g0370 Clacu02g0353 Cmu02g0350 Cre02g0682 Cone12ag1272 Cone8ag1326 Cone3ag1243 . Lsi10g00828 Csa07g00181 . Cme01g01152 . . . . . . . . . . Cmo20g00713 . Cma19g00793 . Car19g00610 Cpe16g00350 . . . . . . . . . . . . . . . Lsi11g01280 . Chy01g00600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015162 0 1 0 0 0 1 1 1 1 0 1 1 0 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5382 PF13912 zf-C2H2_6 4.50E-08 CL0361 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00616 Car_Chr20 FPKM 9.189514 9.819181 9.647378 8.997933 5.824124 6.677003 6.438523 11.375631 11.415295 11.459655