Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00617 ATGGTTCAGAAATCCATAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACGTGCCTTCTCAGGAAAAGCAACTGCAGATTTCTGCAAAGAAGACAGCATTAAGGGACTTGCAAAATGATAATAGGGTCACAGCTTCCAATTGTACTGGAAGCTCTCCTCTTTTGAAGGAAAGAGGTCCGAGTAGTGACTTCATTAAAGTTTCTGGTAACAACCCAGCAACTCCGTCTCATCTCCATTCTTCGACTTCTAATGCTTCAAATGGGCATCTTGTTTACGTCCGTAGAAAGTCCGAGGCAGATATTGGGAAGAATAGTCCTTGTGATAGTACGAACATAAAAGGTGATTATCCAAATCTAAGTAAACTCGGTCAACTAGCTGAAACCGCGCATCTCAAATCCCAGGTTAAGGAGCTACAGACTCGTTGCTTTCCAGCATTTGCTCCTTTTCCAATGGTGTCTCCCATGAATGCATCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAATATGGCATTAATTTCGCCACAGCAGAATCGAACTTCCATCCTGCACCTTCTACTGTCCCTTCAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAATTGTTATTGAATAAATTGGACCAATCTGATCAACAAGATTATCTTCAGGTGCTTCGATCGCTTTCATCGGTTGAACTTAGCAGACATGCAGTCGAATTGGAAAGGAGATCCATTCAGCTCTCGCTTGAAGAAGCAAAAGAGCTGCAGCGAGTTGGGGTTTTGAATGTGCTGGGAAATCCTGTAAAGAGTATCAAAACGCCGTTGACTCATCACGACGGTTCAGAGACGTAA 858 43.01 MVQKSIDSKFSEYGHGNSGKDVPSQEKQLQISAKKTALRDLQNDNRVTASNCTGSSPLLKERGPSSDFIKVSGNNPATPSHLHSSTSNASNGHLVYVRRKSEADIGKNSPCDSTNIKGDYPNLSKLGQLAETAHLKSQVKELQTRCFPAFAPFPMVSPMNASGKPSVPHHVGKYGINFATAESNFHPAPSTVPSGWKNLQWEDRYHQLQLLLNKLDQSDQQDYLQVLRSLSSVELSRHAVELERRSIQLSLEEAKELQRVGVLNVLGNPVKSIKTPLTHHDGSET 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3452856 3454643 - Carg16137-RA Car20g00617 168476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00617 285 MobiDBLite consensus disorder prediction 68 92 - -
Car20g00617 285 MobiDBLite consensus disorder prediction 21 60 - -
Car20g00617 285 PANTHER INTEGRAL MEMBRANE HEMOLYSIN-III-LIKE PROTEIN 1 275 - -
Car20g00617 285 PANTHER INTEGRAL MEMBRANE HEMOLYSIN-III-LIKE PROTEIN 1 275 - -
Car20g00617 285 Pfam Retinal tissue protein 208 266 IPR018737 GO:0006355|GO:0070176
Car20g00617 285 MobiDBLite consensus disorder prediction 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00617 - - - csv:101211824 456.447
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00177 Car20g00617 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00177 Car-Chr2:1059250 Car20g00617 Car-Chr20:3452856 6.58E-155 wgd
Car20g00617 Car-Chr20:3452856 Car05g00861 Car-Chr5:8452632 3.74E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g283 . . . . . . . . . . Cma02g00297 . Car02g00177 Car20g00617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00714 . . . . Cpe16g00349 Cpe05g01339 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012474 0 1 1 0 0 1 2 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00617 Car_Chr20 FPKM 9.752014 11.856202 15.037168 17.547354 15.283707 15.162758 17.544533 15.94479 14.343542 15.223246