Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00635 ATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA 1443 44.01 MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNWEEVSTLSYRMLEEVSKVSTPL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3557088 3558923 - Carg16155-RA Car20g00635 168494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00635 480 ProSiteProfiles Smr domain profile. 370 454 IPR002625 -
Car20g00635 480 Pfam PPR repeat 238 265 IPR002885 -
Car20g00635 480 Pfam PPR repeat 202 231 IPR002885 -
Car20g00635 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00635 - - - bhj:120089515 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00635 Car-Chr20:3557088 Car01g01108 Car-Chr1:10347268 5.25E-09 dispersed
Car20g00635 Car-Chr20:3557088 Car15g00814 Car-Chr15:4599497 9.50E-06 transposed
Car20g00635 Car-Chr20:3557088 Car14g00193 Car-Chr14:911932 4.11E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g214 . Blo15g00393 Bda06g00469 . Bpe07g00705 . . Bma12g00911 . . . Cma20g00733 . Car20g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00731 . . . . Cpe16g00334 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00635 Car_Chr20 FPKM 24.614265 28.686453 24.247585 26.296976 27.408678 21.975128 27.130695 32.213165 31.324478 34.138027