Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00636 ATGGAGAAGATGATGAGTTTAAACCATCTGTTCGTGACGACGTTCATCGGAAGCTTGTCGATGTTCATGGTCATTCCTAGCATTGTTGACATAACAATGGAGTTTGTGTGTCCTCACCAGGATCACTGTTCCATCGCCATTTATCTCTCTGGTCTCCAGCAGGCGATTGTAGGGCTTGGAGCAGTGGTGATAACACCAGTAATTGGGAATCTATCAGACAGATATGGAAGGAAAGCAATGCTGACTATCCCAATGACGTTTTCAATCATACCGCTCGCCATAATGGGTTATAGAAGAACTACCAACTTCTTCTATGCATTTTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACTACAGTTTCACTTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGATCAGAGGATCTCGGCGTTCGGAATCCTATCTGGGGTCAGATCTGTAGGTTATGTGTGTGGAACCTTTTTGGCTCGGCTCCTTTCAACTGCTACAGTGTTTCAGGTGGCTGCTTTCATGTCAGTGCTTGCAGTAGTGCACATGAGGATTTTTCTCAAGGAAAGTATTCCAGATCAGAATGAGTTGACTCAACCGATCTTCGACGAAAACTTAAGTGGTGGTGATGATGAAAATGGACCAGAATTGCCTACAAGAACTCAGTTATCGATAGGGATGTCTCCTATAAGAGACGTTATCTCCTTAATCACGAGTAGCACAACATTTTCACAAGCAGCAAGAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTAGCGTATTTCTTAAAGGCCCGTTTTCACTTCGACAAAAACCAGTTTGCTGACTTGATGATAATTGAGGGGGTTGCCGGGGCCGTTTCACTGTTTCTTTTGATGCCCGCTTTGGCACTAGCTATAAGACAGGAGAGGTTGCTATCAATAGGGCTGTGGGCGAGCATTATAAATATACTACTTAACAGCATAGCTTGGTCAGTTTGGGTTCCTTATGCTTTAAGAGCATTTACAATTTTTACAATTCTGGTCAGTCCAATAGTAAGTTTTCCTTGCTTTCTTCAAAGCTTGTCTTTGCTCATGAAAAAGTGCCGTGGCATTCACACGAATCTATGGCTTCAACAGATATTCAACATTGCATCGAGTCAAGTTGGACCGAGTGAGCAGGGGAAGGCCCAAGGATACATCTCAGGCATTAATTCCCTTGCGAACATTGCTGCTCCATTACTTTTCAGTCCCTTGATAGCTCTTTTCCTCTCCAAGGATGCACCATTTGACTTCCCTGGCTTCGGTATTTTGTGCATTGGGCTCGCTTCGGTAAGGATACAAAATACCTCCTACTGCCCTCTTCCTATGTTTAGATTGCCACTCTATAAAGCCAGACAATATTCCAGCAAAGAACATTGA 1419 43.55 MEKMMSLNHLFVTTFIGSLSMFMVIPSIVDITMEFVCPHQDHCSIAIYLSGLQQAIVGLGAVVITPVIGNLSDRYGRKAMLTIPMTFSIIPLAIMGYRRTTNFFYAFYIMKTLTDMVSEGTTVSLALAYVADKTSEDQRISAFGILSGVRSVGYVCGTFLARLLSTATVFQVAAFMSVLAVVHMRIFLKESIPDQNELTQPIFDENLSGGDDENGPELPTRTQLSIGMSPIRDVISLITSSTTFSQAARVSFFNSLAEKGMQASLAYFLKARFHFDKNQFADLMIIEGVAGAVSLFLLMPALALAIRQERLLSIGLWASIINILLNSIAWSVWVPYALRAFTIFTILVSPIVSFPCFLQSLSLLMKKCRGIHTNLWLQQIFNIASSQVGPSEQGKAQGYISGINSLANIAAPLLFSPLIALFLSKDAPFDFPGFGILCIGLASVRIQNTSYCPLPMFRLPLYKARQYSSKEH 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3561224 3563998 - Carg16156-RA Car20g00636 168495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00636 472 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Car20g00636 472 Pfam Major Facilitator Superfamily 10 412 IPR011701 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00636 - - - cpep:111776692 846.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car19g00589 Car20g00636 CCT
Car19g00589 Car20g00636 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00474 Car-Chr15:2564075 Car20g00636 Car-Chr20:3561224 1.79E-72 dispersed
Car19g00589 Car-Chr19:7287377 Car20g00636 Car-Chr20:3561224 2.77E-164 wgd
Car20g00636 Car-Chr20:3561224 Car05g00274 Car-Chr5:1501788 1.23E-126 wgd
Car20g00636 Car-Chr20:3561224 Car07g00672 Car-Chr7:3423116 1.35E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00636 Car_Chr20 FPKM 0.0 0.0 0.0 0.0 0.257497 0.0 0.0 0.467554 0.677292 0.873332