Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car20g00642 | ATGTTCTCAGGGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGCGGTCGGATCGACATGTGCACAAAGGTTCAGATGCTGGTGGTCGACAGGATGGTCTCTTATGGTACAAGGATAGTGGACAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAATAATTTACTTGAGGATCAAAGCCAGATGGAGTCGGGCAATTTGAGCTTGCACGAGGCTGGGCCATATGGTACTTTTGTTGGTGTGTATGATGGGCATGGAGGGCCAGAGACATCTCGCTATGTAAATGATCATCTCTTCCAGCATCTTAAAAGGTTTGCTTCCGAGCAACAGTCCATGTCGGTGGATGTCATACGAAAGGCGTTTCAAGCTACCGAAGACGGGGTTATCGCTCAAGTTTCAAAACAATGGTCAATGAGGCCACTAATTGCAGCTGTTGGATCTTGCTGCCTTGTAGGTGTAATTTGTGGTGGAACTCTTTACATAGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCTGTCCAGTTGTCGGCTGAGCATAATGCATCAATAGAGTCTGTCAGGCAGGAGCTCCGGGCCCTGCACCCTGATGATCCACATATTGTTGTCTTGAAGCATAATGTATGGCGTGTGAAGGGCCTTATACAGGTTTCTCGATCCATCGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTATATGCTAAGTTTCGCCTTCGTGAACCTATCAAAACGCCCATACTGAACGCCGAACCATCCATTTCAGTGCTCCAGTTGCAACCACAAGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGCAATGGAAGTGCAAGGAGGTTAGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAACGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCGTACGGCGACATTTCCACGATGACATCACAGTGGTTGTTGTGTTTCTCGACTCGAACCTTGTGAGCCGGGCTAGCTCTACAAAATGCCCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCATCCGAACTCATTGGCCCCTGGCATGGCCTGA | 1173 | 47.57 | MFSGLMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFASEQQSMSVDVIRKAFQATEDGVIAQVSKQWSMRPLIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKTPILNAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSTKCPSLSMRGGGVNLHPNSLAPGMA | 390 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3616045 | 3620310 | - | Carg16162-RA | Car20g00642 | 168501 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car20g00642 | 390 | ProSitePatterns | PPM-type phosphatase domain signature. | 81 | 89 | IPR000222 | GO:0043169 | |
| Car20g00642 | 390 | ProSiteProfiles | PPM-type phosphatase domain profile. | 47 | 355 | IPR001932 | - | |
| Car20g00642 | 390 | Pfam | Protein phosphatase 2C | 79 | 324 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car19g00585 | Car20g00642 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00083 | Car-Chr6:580846 | Car20g00642 | Car-Chr20:3616045 | 4.80E-145 | dispersed | |
| Car14g00153 | Car-Chr14:726511 | Car20g00642 | Car-Chr20:3616045 | 0 | dispersed | |
| Car14g00383 | Car-Chr14:1921536 | Car20g00642 | Car-Chr20:3616045 | 1.22E-150 | dispersed | |
| Car19g00422 | Car-Chr19:6051801 | Car20g00642 | Car-Chr20:3616045 | 3.28E-125 | dispersed | |
| Car16g00633 | Car-Chr16:4034763 | Car20g00642 | Car-Chr20:3616045 | 0 | wgd | |
| Car19g00585 | Car-Chr19:7264932 | Car20g00642 | Car-Chr20:3616045 | 0 | wgd | |
| Car20g00642 | Car-Chr20:3616045 | Car03g00605 | Car-Chr3:5617688 | 0 | wgd | |
| Car20g00642 | Car-Chr20:3616045 | Car07g00353 | Car-Chr7:1775218 | 0 | wgd | |
| Car20g00642 | Car-Chr20:3616045 | Car07g00667 | Car-Chr7:3388579 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car20g00642 | - | K01102 | csv:101221640 | 751.895 |