Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00644 ATGGAGCAACAGGGTTCTGTGGACAAGGAATCTCTTATCGGTACTGGCAATAGTTATACGAATAGGGATGGTGTTTCTTCAAGTGAAAATGTCCACATGACAACTATAAATAATGATGAAACTAGAAGAACTAATGAGAATACAAGCGACAAACCTAGTATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGACATTACTGATGATGAAGATGAAGATGAAGATGAAGATGAGGATGGTGAGGATGGTGAGGATGATGATGGTTGTGATGATGATGATGGTGATGGAGAGAAAGTAGGACAAAATAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATTCCAACAGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCTGAATGTTAATGACCTAACAGTTATAGATAGGGGATTCTTACATGGTGATTTTGTTGCTGCTGTTTCTGATCCAACTGGGCAGGCAGGTGTTGTGGTAGATGTAAATATCTCTGTTGATTTGCTGGTTCCTGATGGATCAATTATGAAAGATATATCATCTAAAGACTTGAAACGTGTGAGAGACTTCACTGTGGGGGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAAGTCACAAAGGCAGAGCCAATGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTCCCTTACTATCCTGGTCAGCGTGTAAAGGCGAGTTCTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCCAATCGCTTGGAAGGTACTGTCACCAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTGAGATTACTGACTTGTTTCTCACATGCAAATTGGCAGTTGGGCGACTGGTGTCTTCTTCCCTCATCATTCTCCTCTGGCTTGACTAAGGAATCATCACGAACACATCGTTCTGATTCAGTGAACAACTCATTAGATTCCACACAACCGGAGGGTGTTTGTGATTCAGAGGATGTTGTGCTAAATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCCTCAGTGCATGTGATGGAAATTATAGGAATCCTGAATGTAATATTTTGCCTGAATCTAGTAATTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGTAAAGTTGTCATCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCCGGACAGAACGTGGACTGGATTCAACAAACTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCGGAACAGTATGTGGTTGAGAAGGCCTCCGATAATGATGATGATATTAGCGAAAGCAGGCGGGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGCACAGCCTGTGTAATGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATACAAGAAATTGTTAGTGTGTATGAACTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTGATTCTATAGAATCGATGTCTTTGGGTAACGATACAGAGGAATTAAAGCAGCAAAGTTCAACAAATGAGATGATGAATTGTACAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCCTCATGTAGTGATGATTGCATTGACTTCTCAGATCTCTCCTGGGTTGGAAACATAACTGGTCTCAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTCGGTCGAGATGATGATGATGAATCTATTGCTGCTGGGAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGATGATGATGAAAGGGATTGTGTTGATAATGCTAAGGAGGAGGATATCGAGCTGCAAGATCCTGGTGTGAATTCTGAAGAGGAAGGAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCGTTTGCTGCAATTCGATTTTTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGAATCAATGGATGTGGATTCCCACAGTGAAAGTGAAACTCAATCCTTGGAAATTCAAGCTTTAGAGGAAAAAGATTCTGGGCTTCAGTCTAGCTCTCTTAAATCCAATTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGGAGAGGATAATATTGCTTCAGAGCCATCAGAAGTGTCGGAATCGGCAGACGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGGTTCAGCATGCCATGAGGATGGCACCTGCAGCTTCAAAGGGTTTGATATAGCTAAAGATCCTTTGGACCATTATTTCCTTGGTACAAATGGACAAACTAATAGTGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAACAATTTGCCAGATGGGATATACGTTCGAGTCTACGAAGACCGTATGGACCTCTTAAGAGCAGTCATTGTTGGGGCTTACGGGACTCCATACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCCGACGTTCCACCATCAGCGTATTATCATTCAGGTGGGTGGCGTATAAATCCGAATCTTTACGAGGAAGGCAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGTAGAGGAAATGAAGTGTGGGATTCAAAGTCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCATACTTTAATGAAGCTGGATATGACAAGCAAATTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTCGAAGAACTGGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTTAAGGCCTGTGATGCATACATGAAAGGCCACTTAATTGGCTCGCTTACAGAAGATGCCTCTATAAGAGAGAACAGCGATCCCAACTCGACGTCGGTTGGCTTTAAGCTTATGCTTGCTAAGATCGTTCCAAAGCTCGTGTCATCGTTGAACGAAGTTGGAGCTGATTGTGATGATTTTAAGCATTTTCAACAGTTGTAG 3459 41.51 MEQQGSVDKESLIGTGNSYTNRDGVSSSENVHMTTINNDETRRTNENTSDKPSIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDEDEDEDGEDGEDDDGCDDDDGDGEKVGQNKENYGDDSNAKNSNRDNYKSQPLPDDEVRVLWMDESETTLNVNDLTVIDRGFLHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPMRLKPVSKNILEDANFPYYPGQRVKASSSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPSSFSSGLTKESSRTHRSDSVNNSLDSTQPEGVCDSEDVVLNELSGTTESTDLDSLSACDGNYRNPECNILPESSNSRALKETTHETWPLHRKKIRKVVIRRDKKARKKEENFERALLIINTKTKVDVAWQDGRTERGLDSTNLIPIDNPGDHEFVPEQYVVEKASDNDDDISESRRVGVVKSVHAKERTACVMWLKPVSRAEDPREFDIQEIVSVYELEGHPDYDYCYGDVVVRLSPVSDSIESMSLGNDTEELKQQSSTNEMMNCTEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDDDERDCVDNAKEEDIELQDPGVNSEEEGSEQNNSGRNLALSVPFAAIRFFTRLAAGIFSRGPRNPESMDVDSHSESETQSLEIQALEEKDSGLQSSSLKSNSFDASDMNSDCGRGEDNIASEPSEVSESADASSNLRTAESDGSACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNSGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDSKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIRENSDPNSTSVGFKLMLAKIVPKLVSSLNEVGADCDDFKHFQQL 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3635454 3642814 + Carg16164-RA Car20g00644 168503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00644 1152 MobiDBLite consensus disorder prediction 843 862 - -
Car20g00644 1152 Pfam Ubiquitin-conjugating enzyme 906 1050 IPR000608 -
Car20g00644 1152 MobiDBLite consensus disorder prediction 704 756 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 76 145 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 380 402 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 82 115 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 1 42 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 116 136 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 810 829 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 1 61 - -
Car20g00644 1152 MobiDBLite consensus disorder prediction 781 867 - -
Car20g00644 1152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 901 1061 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00644 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 1958.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00664 Car-Chr7:3367110 Car20g00644 Car-Chr20:3635454 0 dispersed
Car09g00780 Car-Chr9:4602238 Car20g00644 Car-Chr20:3635454 1.09E-89 dispersed
Car20g00644 Car-Chr20:3635454 Car04g01680 Car-Chr4:9656075 2.76E-09 dispersed
Car03g01135 Car-Chr3:9137583 Car20g00644 Car-Chr20:3635454 1.35E-55 transposed
Car20g00644 Car-Chr20:3635454 Car07g00663 Car-Chr7:3366251 3.89E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00644 Car_Chr20 FPKM 4.609935 6.40882 0.51857 0.47169 141.244339 161.586151 138.875656 0.908763 1.297338 1.060154