Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00646 ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTATCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA 438 53.65 MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3644362 3644799 - Carg16166-RA Car20g00646 168505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00646 145 PANTHER UNCHARACTERIZED 8 143 IPR045866 -
Car20g00646 145 MobiDBLite consensus disorder prediction 59 93 - -
Car20g00646 145 MobiDBLite consensus disorder prediction 78 93 - -
Car20g00646 145 PANTHER PROTEIN FAM210B, MITOCHONDRIAL 8 143 - -
Car20g00646 145 Pfam FAM210A/B-like domain 9 130 IPR009688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00646 - - - mcha:111015379 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00646 Car-Chr20:3644362 Car07g00662 Car-Chr7:3363742 1.56E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g176 . . . Bda08g00986 . . Bma05g00376 . . . Cma02g00266 Cma20g00743 . Car20g00646 . . . . . . . . . . . . . . . . . . . . . Lsi10g00503 . Chy11g00246 . . . . . . Bpe05g00294 . . Sed01g0183 Cmo02g00262 Cmo20g00741 . . . . Cpe16g00323 Cpe05g01366 Bhi10g01831 Tan05g1116 Cmetu11g0944 . Hepe08g0304 . . Cla02g01177 Cam02g1256 Cec02g1265 Cco02g1304 Clacu02g1238 Cmu02g1205 Cre02g1520 . Csa02g01402 . Cme11g00371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007933 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00646 Car_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0