Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00647 ATGATGATGGTGAAGCTGTTCATGTTTCTTAGCTTTGGTGGATTGTCAATGTGTGAGGTGTTTCTTGTTGGAGACGAAGAGGGCTGGAACTCTGGCATCAATTTTGCTACCTGGTCTCAAAACCACAACTTCACCAAAGGAGATTTTCTAGTTTTCAATTATGCAAAGAGTGTACACAATGTGTATGAAGTTACTGAGGAAACATTCAGATCATGCGAGACAAGTAATGGAGTATTAGGTGAATATGAGAGTGGAAACGATCAAATTGAGCTGAAAGAAGCAAGGAAGTATTGGTTCATATGCAATGTGGCTGGTCATTGCTTGGGCGGAATGAGGTTTGGAATTGATGTCAAACAACCCAATTCTAGTAGCCATCTCCCACTTAGTCCTGTTCAATCTCCTCCCCCACCCACTAACCATGCCTCTAACCATGGAAGCTATGCACTATGGAGCACTTTTATGTGTATTATAGCATTTCAAACTCTGTTCGTTTGA 495 41.41 MMMVKLFMFLSFGGLSMCEVFLVGDEEGWNSGINFATWSQNHNFTKGDFLVFNYAKSVHNVYEVTEETFRSCETSNGVLGEYESGNDQIELKEARKYWFICNVAGHCLGGMRFGIDVKQPNSSSHLPLSPVQSPPPPTNHASNHGSYALWSTFMCIIAFQTLFV 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3645807 3647535 + Carg16167-RA Car20g00647 168506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00647 164 Pfam Plastocyanin-like domain 29 111 IPR003245 GO:0009055
Car20g00647 164 ProSiteProfiles Phytocyanin domain profile. 19 119 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00647 - - - cmax:111483949 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00951 Car-Chr14:5753090 Car20g00647 Car-Chr20:3645807 1.47E-23 dispersed
Car19g00030 Car-Chr19:214048 Car20g00647 Car-Chr20:3645807 1.27E-22 dispersed
Car20g00647 Car-Chr20:3645807 Car17g00222 Car-Chr17:1374663 9.78E-22 transposed
Car20g00647 Car-Chr20:3645807 Car05g00463 Car-Chr5:2643010 1.88E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00647 Car_Chr20 FPKM 9.244884 11.911592 6.689046 7.636531 7.171276 6.070172 6.523088 7.926631 8.656799 7.401189