Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00653 ATGACTGTTGATCATGAGGATTCTGAGGCAATCGAAAAGAAGAAGAAGAAGAAGAAGAAGAATGTGTTAGTGGGGATTAGAATAAATGGCAATAGCAGAGATTTGCTCAATTGGGCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTTATTGTAATCCATGTTTGTCAAACTTCTGACCGTGCATCAAAAGATAAGCCCTTATTTGATGAATTCATAGAAGGATACAAAAGGCTTTGTGATGTAAACAAGGTAGCTCTGATTGCTCAGATATCGACTGGAAGTTCGGTTAAGAAGACTTTGGTTAGACAGGCGAAAAGCTATGCCGCCGGGGCCGTGGTTTTGGGAACAAGCAAACCATCTAATCTTGGGGAATTCACTGAATGGCCTTTTGGTTTGTTTCTTGAGTTGATCTTAACAGAAGCCATTTGCAGGGGTTGGTCTTCAACAATTAGATACGTTGTTAAGCGACTGCCTCCAACGACCGATGTTTTGGCTCTCAACAATGGCAAAATTGTCTTCAGAAGATCCACCAATGATCAACTACCAGGGTTGAATCTAGACCCAAAACCAAGCTTAAGTCAAGCTAGCCAATCTGACTTTGATGGCTCTGAGACTGAGAAATCTGTTTCTTATGGGGTTGGTAGTGAAGACTTGAAGGATGAATTTCATGGAGTTGTTCTTGAAAGTAAAAGGGTTTGTTCCAAACAAGATTCTCCAATGAAGAAGGTGAATTCCGAGCCGGGGCTTGGCTGGCCATTGCTTCGAACGTCTCCAAGGATTCCGCAAACCCCATGTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCCGATCGTTCCCCGTTTCATAGCTTAAGCATAAAAGGAAATGATCCATCACGAAGCGAGATCTCGGGTTTATCTGCCTTTTCTGAACCACCAGGAAACCTGGAGGATCTCTTGAAAACTATCTCAACTAGTTATAAATGGTTTAGTCCTGATGTGTTGAAAGCTTCAACTTCGCATTTCTCTTCAGAAAATCTGATTGGGAAAGGCGGCTGCAATCGTGTATACAAAGGAATTCTCCCAGATGGTAAGCCAATAGCTGTTAAGGTAATGAACTTTTCGAAACAGGCATGGAACGATTTTTCTCGAGAAGTTGACATTATATCCTCGTTACATCACAAGAACATAACTCCCTTTCTCGGTATCTGCATCGAACACGATACGTTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGAAAATTTATATGATAGAAACAAAGAAAAAGGCGTACTTTCATGGGAGGTAAGATTCGAGTTTGCGATTGGAATAGCGGAAGCGCTAAACTACCTACACGACGAATGTCCTCAGCCTGTTGTACACAGAGATGTCAAGACATCAAACATTCTGCTCACCGATGAACTCGAACCACAGTTATCAGATTTTGGGCTTGCAACCTGGGGACCGACAGAATCATCCTTTCGGATCGAAGCTGATGTCGTGGGAACGTTTGGATATCTTGCTCCTGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCGTTTGGTATCGTTCTACTTGAATTGTTATCGGGACGAAGAGCAATCAGCACCGAGACATCGAAAGAGCAGCAGAGCCTGGTTATGTGGGCCAAGCCAATGATAGAGAATGGCAATGTAAAGAACATAGTTGATCCAAATTTGGAGGGGAAATTCAATGACGAACAGTTGCAAAGAATGGTTCTTGCAGCAACGCTTTGCATCACGAGGGCATCTCGACTCCGTCCTAGAATCAGTCAGATATTGAAGATTCTAAGAGGGGAAAGCAAAACCGAAACCGAAAACATCCATATGGAGGATTCACAAAGCGTGGAGAATGGAGATGATGAAGTTTATCCAAATTCAAGCTCGGAACTGCATTTGAGCCTTGCATTGGTCGGTGTTGACGACGACAACGACAACGACGGTGACGACTCATTTAGCAGTGTGGAACAGCGAAAAAGAATATGTTTGGAAGATTATTTGAAAGCAAGATGGAGCAGATCCTCAAGCTTCAACCAGCTTCTTTAG 2085 42.4 MTVDHEDSEAIEKKKKKKKKNVLVGIRINGNSRDLLNWAIVKVADPGDCVIVIHVCQTSDRASKDKPLFDEFIEGYKRLCDVNKVALIAQISTGSSVKKTLVRQAKSYAAGAVVLGTSKPSNLGEFTEWPFGLFLELILTEAICRGWSSTIRYVVKRLPPTTDVLALNNGKIVFRRSTNDQLPGLNLDPKPSLSQASQSDFDGSETEKSVSYGVGSEDLKDEFHGVVLESKRVCSKQDSPMKKVNSEPGLGWPLLRTSPRIPQTPCVHNMSVVQWVMNLPDRSPFHSLSIKGNDPSRSEISGLSAFSEPPGNLEDLLKTISTSYKWFSPDVLKASTSHFSSENLIGKGGCNRVYKGILPDGKPIAVKVMNFSKQAWNDFSREVDIISSLHHKNITPFLGICIEHDTLISVYDFFSKGSLEENLYDRNKEKGVLSWEVRFEFAIGIAEALNYLHDECPQPVVHRDVKTSNILLTDELEPQLSDFGLATWGPTESSFRIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAISTETSKEQQSLVMWAKPMIENGNVKNIVDPNLEGKFNDEQLQRMVLAATLCITRASRLRPRISQILKILRGESKTETENIHMEDSQSVENGDDEVYPNSSSELHLSLALVGVDDDNDNDGDDSFSSVEQRKRICLEDYLKARWSRSSSFNQLL 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3674484 3677989 - Carg16173-RA Car20g00653 168512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00653 694 PANTHER OS08G0249100 PROTEIN 143 664 - -
Car20g00653 694 PANTHER OS08G0249100 PROTEIN 18 125 - -
Car20g00653 694 MobiDBLite consensus disorder prediction 183 214 - -
Car20g00653 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Car20g00653 694 Gene3D Phosphorylase Kinase; domain 1 312 413 - -
Car20g00653 694 CDD USP_Like 21 126 - -
Car20g00653 694 Gene3D HUPs 2 145 IPR014729 -
Car20g00653 694 ProSiteProfiles Protein kinase domain profile. 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00653 694 SMART serkin_6 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00653 694 SUPERFAMILY Protein kinase-like (PK-like) 319 610 IPR011009 -
Car20g00653 694 Pfam Protein kinase domain 340 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car20g00653 694 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 143 664 - -
Car20g00653 694 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 18 125 - -
Car20g00653 694 Gene3D Transferase(Phosphotransferase) domain 1 414 629 - -
Car20g00653 694 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 126 - -
Car20g00653 694 MobiDBLite consensus disorder prediction 183 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00653 - - - csv:101206547 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00941 Car-Chr3:7332890 Car20g00653 Car-Chr20:3674484 1.72E-07 dispersed
Car19g00595 Car-Chr19:7373769 Car20g00653 Car-Chr20:3674484 6.88E-66 dispersed
Car20g00653 Car-Chr20:3674484 Car20g00910 Car-Chr20:9867795 2.20E-19 dispersed
Car20g00653 Car-Chr20:3674484 Car07g00656 Car-Chr7:3333715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89616 PF00069 Pkinase 6.20E-41 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00653 Car_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0