Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00655 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCTGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACCCGTTCTAGCAAGCGCGCTCGTCTCTCTGGTACTTTCTCTTCGAATCTTGCTGCATCCACTCTTTCGATCTCAACACGTTCTCGCTCTACTCGAAACCAAGAACCGTCTGCCACTAGTACTCCAATGGACTCGACCAATGAGTCATCAGGGTCACGCCGACGCGGAAAGAATTCTGATAAGGAAAACTCGGATAAGGGGAAGGAGAAAGAACACGAGGTTAGAATCGGGGATAGAGAAAGAAATGCTGAGCAGAGTTTTGGGTTAAATATTGAAGGCAGTGGCGGTGGGGATGATGATGATAACGACAGTGAAGGAGGAATGGGAGTCTTACAGCAAAATTTATCCACAGCAAGCAGCGCCCTTCAAGGACTTCTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCATCTTCCGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGAAGGCAGGTTGAGGCATTGACCCAACTTTGTGAGATGCTCTCTATTGGCACCGAGGAGTCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTCGTTGGGCTACTTAATCACGAAAGCAATCCTGATATAATGCTTTTAGCGGCCAGGGCACTGACCCATCTGTGCGATTTCTTACCTTCATCATGTGCTGCCGTCGTGCATTATGGTGCCGTTTCCTGCTTCTGTGCTAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCCTGTCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGAGAGTTGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTCGTGATGGAAGCTGTTCCCCTGCTGACGAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTGTGTAACCATGGACTTGTTACTCAAGCTGCCTCACTCATTTCCACCAGTAGTACCGGAGGTGGGCAGTCAACTCTTAGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGGGAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATTCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATTGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAACTATTTCCTTTCCGCCCAACTATAATTTGTTTGTGAAAGGACCTGTCATCAAAAAGCCATCTACCAGCGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGCCCCGGAGATGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATCTTAATACAGATCTATGGATCCAGTGTGAATGGTCCGGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACCCCAGAGATGATACAGTCATTATTGAATGTGACCAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTTTGATTCCTTCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACTTTTTCTAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACTGCTACCCAAGTGGCTTCTGTTGAGAAGGACAACAACTCTGCATCTGGAGCTTCTTCACGCACTCGACGTTACAGGCGGCGCAGTGGAAATATGACTTCAGAAGGAAGTTCACTGGATGAAAACAAAAATCCTGTTTCTGGAGGCAGTGTTCCACAAGGTTCGGTGGAGGTTCCATCAATTAACTCTAATCTCCGAACTTCGGTAAGTGCCTGTGCCAATGCTTTTAAAACAAAGTATTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGCGCCAAGTTGAATGCTGGTATTGATGTTCAGAAAAGTAAATCGAAAGGAAAGTCGAAAGCTTCAGGGTCCTGCATAGATGATATTATTACAAATAAGGATCAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTAGGCAAAGATGATGGTGTTTCCACGTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTGACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTTGGAAGCGGAGTTGCCAAAGATTCGGCAGCAAGTGCTTAAAAGATTTAAATCACTTGTTTCTGTTGCTCTTTCCACAAGCATTAATGAGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCATTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCATGGAGAAAAATTACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAGAAGTGAGGGTCAGAAACTTTCAGTATCTGGTGCAAACTCAGATTCAGGAACTACTCCTCCAGGAACTGTTGCTCCATCAGGGCTAAAATCAACCCCCAGTTCAACCACTTGCCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGGGCAGGGAAGGAGTTGTCACAGGATAAAAGCACATCGAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTACAAACCAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACCACTTCCGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACACAGCTGAAGATGGCGATGCTGGTCCGGCTACAAGTGATAGCCAGATTCATTCAACTTTTGGCTCTAGCAGTAGAACTGCGACAATCAGGGGTTCTAATTCTCCTGATCATAGGGGTGGAAATTCTTTTAGTGCAAGGGGAAGTATGACATTTGCTGCTGCTGCTATGGCTGGACTTGGACCAGCTAACGGCAGAGGTTTCCGTGGAGGTCGAGATCCACAGGGACATCCTCTCTTTGGTGGTTCCAATGATAACCCAAAATTACTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTTTTGAATGAGGATGATGATGAGAGGTTTGCTGGGGCTGGCAATGATTTCTTATCTAATGATGGGAGCAGTTTGTGGGGTGATATATATACCATCACGTATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAATTCAAACTTCAGATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATCCTACATATGATATACTATCTTTATTACGTGTACTTGAGGGATTGAATCAGCTTGCTCCTCGCTTGAGGGCTCAAATAGTGTCAGATCAATTTGCAGAGGGAAAGATCACTACGCTTGATGAATTGGGTGGAATTGGAGGAAAGGTTCCTCATGAGGAATTTGTCAACAGTAAGCTTACTCCCAAATTGACTCGACAAATTCAAGACGCTCTTGCACTGTGCAGTGGGAGCCTTCCTTCATGGTGTTATCAATTGACTAAGGCATGCCCGTTCTTGTTTCCTTTTGAGACACGGCGACAATATTTTTATTCAACTGCATTTGGGTTGTCACGTGCGTTATATCGGCTACATCAGCAGTTAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAGGTTCGTGTCTCCCGTAATCGTATACTGGATTCTGCTGTGAAAGTTATGGAGATGTATTCTAACCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAATAGATAGTGGTGAAGATGGACAGCTCAGGAAGCCTAAAGATGGCTCTAAGCTTATTTCTGATGCAGGCAATATTGATATCATCCAATCTCCTCTTGGGTTGTTTCCACGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCTAAGGCTTTGCAAGATGGAAGACTATTGGATCTACCACTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGTACGATATCCTCTCATTTGACCCTGAGCTTGGGAAGACTCTACAAGAACTGCAGGCTCTTGTCTGCCGGAAACAGTATTTAGGATTGGTAGATGGTGACAATCAAAATACAATTTCCAACTTATCTTTCCGTGGCATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGCTATCCGGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCAACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTACAGGATTCAATCAGGTTTTTGACATCACTGCATTACGCATATTCATTCCCCATGAATTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCTGACACACTTGTTGATCATATTAAATTTGATCATGGATACACAGCCAAAAGTCCTGCCATAGTCAATTTTCTTGAGATTATGGGCGAACTCACACCGGAGCAGCAGCGAGGATTCTGCCAATTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTCGCAGTGCTGAATCCAAGATTGACTATCGTGAGAAAGCACTCATCAACTGCAACAAACGCAGCAAACAGTGCGACAGGGGTATCTGAATCAGCAGACGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCGACCAAGGAAATAATGTACAAGAAACTAATGTATGCGATCAATGAGGGGCAAGGATCATTTGATTTGTCATGA 5667 43.96 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSGTFSSNLAASTLSISTRSRSTRNQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGDDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDFLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGGKTLLLLGISGILKDILSGSGVSTNSSVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNYNLFVKGPVIKKPSTSGSVKEEDPTDSAPEMSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPSLQIAEILMEKLPETFSKMFLREGVVYAVDQLILANNQNTATQVASVEKDNNSASGASSRTRRYRRRSGNMTSEGSSLDENKNPVSGGSVPQGSVEVPSINSNLRTSVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCAKLNAGIDVQKSKSKGKSKASGSCIDDIITNKDQYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLDYFSCGYFSKGRILEAELPKIRQQVLKRFKSLVSVALSTSINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAHGEKLLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSEGQKLSVSGANSDSGTTPPGTVAPSGLKSTPSSTTCRYSTRSRSSMTIGERAGKELSQDKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTAEDGDAGPATSDSQIHSTFGSSSRTATIRGSNSPDHRGGNSFSARGSMTFAAAAMAGLGPANGRGFRGGRDPQGHPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGNDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNFRFHQMSLLDSILQGKLPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITTLDELGGIGGKVPHEEFVNSKLTPKLTRQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQLGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAVKVMEMYSNQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIDSGEDGQLRKPKDGSKLISDAGNIDIIQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLYDILSFDPELGKTLQELQALVCRKQYLGLVDGDNQNTISNLSFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTTGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGELTPEQQRGFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGVSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3686300 3699442 - Carg16175-RA Car20g00655 168514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00655 1888 MobiDBLite consensus disorder prediction 1131 1165 - -
Car20g00655 1888 SUPERFAMILY ARM repeat 177 646 IPR016024 -
Car20g00655 1888 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 50 1888 IPR045322 GO:0006511|GO:0061630
Car20g00655 1888 Pfam HECT-domain (ubiquitin-transferase) 1512 1888 IPR000569 GO:0004842
Car20g00655 1888 MobiDBLite consensus disorder prediction 654 708 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 654 669 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 960 1004 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 10 73 - -
Car20g00655 1888 SMART hect_3 1478 1888 IPR000569 GO:0004842
Car20g00655 1888 MobiDBLite consensus disorder prediction 1108 1122 - -
Car20g00655 1888 Gene3D - 179 660 IPR011989 -
Car20g00655 1888 MobiDBLite consensus disorder prediction 960 1165 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 74 106 - -
Car20g00655 1888 SUPERFAMILY Hect, E3 ligase catalytic domain 1456 1881 IPR035983 GO:0004842
Car20g00655 1888 CDD HECTc 1464 1883 IPR000569 GO:0004842
Car20g00655 1888 MobiDBLite consensus disorder prediction 1010 1053 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 1065 1100 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 1 134 - -
Car20g00655 1888 MobiDBLite consensus disorder prediction 680 708 - -
Car20g00655 1888 Gene3D Hect, E3 ligase catalytic domain 1759 1886 - -
Car20g00655 1888 ProSiteProfiles HECT domain profile. 1488 1888 IPR000569 GO:0004842
Car20g00655 1888 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 50 1888 - -
Car20g00655 1888 Gene3D Hect, E3 ligase catalytic domains 1404 1650 - -
Car20g00655 1888 SMART arm_5 209 250 IPR000225 GO:0005515
Car20g00655 1888 SMART arm_5 335 373 IPR000225 GO:0005515
Car20g00655 1888 SMART arm_5 292 332 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00655 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3273.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00299 Car-Chr6:1670100 Car20g00655 Car-Chr20:3686300 4.03E-115 dispersed
Car14g00165 Car-Chr14:776393 Car20g00655 Car-Chr20:3686300 5.18E-114 dispersed
Car17g00357 Car-Chr17:2273875 Car20g00655 Car-Chr20:3686300 2.75E-30 dispersed
Car20g00655 Car-Chr20:3686300 Car05g00480 Car-Chr5:2733818 1.02E-32 dispersed
Car20g00655 Car-Chr20:3686300 Car07g00652 Car-Chr7:3310514 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00655 Car_Chr20 FPKM 2.904956 3.251918 1.318788 1.333967 24.694386 30.240568 25.979378 0.0 0.0 0.0