Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00658 ATGGCCGCTTATCTCTCCCCTCTCTTCTTCTTCTTCTTCCTTTTGATTGTTCATCGATTTACAGTTTCGGCCGATTCGCCATTGAAGAAGACCTTCATCTTCCGTGTGGATCGTTTCTCTAAGCCCTCTGTTTTTCCGACCCATTACCACTGGTACACTTCTGAGTTTGCAGAATCCCACAAAATCCTCCATGTTTACGACACTGTTTTCCATGGATTCTCTGCAACTCTTACTCAACAACAAGTTGATTCCATCGGGAAACACCCTTCTGTGCTCGCCGTTTTTGAGGATCGTCGCCGGCAGCTTCACACCACCCGTTCCCCTCAGTTTCTTGGCCTTCGAAACCAGCGTGGTCTCTGGTCGGATTCTGATTATGGGTCGGATGTAATCATTGGGGTTTTCGACACTGGGATTTCCCCCGAACGGCGAAGCTTCTCCGATGTGAATTTGGGGCCGATTCCTCGGCGGTGGAAGGGGGTTTGTGAGACGGGAACTAAGTTCACGGCTAGAAACTGTAATAGGAAGATCGTCGGTGCGAGGTTTTTCTCTAAGGGTCATGAAGCTGGGTCCAACGCTGCTGGTCCGATTATTGGGATTAACGATACGATTGAGTTTAGATCTCCGAGAGATGCCGACGGCCATGGGACTCATACGGCCTCCACGGCGGCTGGACGGCATGCGTTTCAGGCGAGTTTGGAGGGTTTTGCTTCTGGGATAGCGAAGGGTGTGGCTCCTAAAGCGCGTTTGGCGGTTTATAAAGTTTGTTGGAAAAATTCTGGTTGTTTTGATTCTGACATTCTTGCGGCGTTTGATGCGGCGGTTAACGACGGCGTGGATGTCATTTCGATCTCGATTGGAGGCGGCGATGGGGTTTCCTCGCCGTATTATCTCGACCCAATTGCAATCGGAGCGTACGGCGCCGCTTCCAGGGGTATCTTCGTTTCGTCTTCGGCTGGGAATGATGGACCTAATGGAATGTCAGTGACGAACTTGGCGCCGTGGGTTACGACCGTTGGAGCCGGTACGATTGACCGTAATTTCCCGGCGGTGGTGACTCTGGGTAACGGACGGAGGATTTCCGGCGTGTCACTCTACGCCGGAGCGCCTTTGAACGGTACAATGTTTCCATTGGTTTACCCTGGGAAATCAGGGGTGCTCTCTGTTTCGCTCTGTATGGATAACTCTCTCGATCCTAAGGTTGTTGCCGGAAAAATTGTGATCTGCGACAGGGGAAGTAGTCCCAGAGTGGCTAAGGGTTTGGTCGTTAAGAAAGCTGGCGGCGTCGGAATGATTCTGGCGAATGGAATCTCAAACGGCGAAGGACTCGTCGGCGATGCCCATCTTCTCCCCGCCTGCGCAGTCGGCTCCGACGAAGGCGATTCCATGAAAGCCTACGCATCGTCCTCTCCAAATCCCACCGCTACCATCGCCTTCCAGGGCACTATAATCGGAATCAAACCGGCGCCGGTGGTGGCTTCCTTCTCAGCAAGAGGGCCAAATGGATTAAACCCAGAAATTCTAAAACCAGACATAATCGCACCAGGGGTTAACATTCTCGCCGCCTGGACCGACGCTGTCGGTCCAACCGGTTTGGACTTTGATACAAGAAAAACAGAGTTCAACATCTTGTCTGGTACATCAATGGCGTGTCCTCATGTAAGTGGTGCCGCTGCTCTGTTGAAATCAGCTCACCCAGATTGGAGTCCAGCGGCGTTAAGATCCGCCATGATGACCACCGCAAGTACCACCGACAACCGACGACAGCCGATGACGGAAGAATCCACCGGAAAAGCTTCAACTCCGTACGATTTCGGTGCAGGGCATGTAAATTTGGGTCTAGCAATGGACCCTGGTTTAGTCTACGACATTACAAACACGGATTACATCAACTTCTTGTGCTCAATCGGATACGGACCGAAGATGATTCAAGTGATAACAAGAACGCCGGTAACCTGTCCGGCGAAAAAACCATTGCCGGAAAATCTCAATTACCCATCAATCGTTGCAGTATTCTCCAGTCTATCAAAAGGGTGGTCGACAAAATCGTTTATCCGAACAGTGACGAACGTGGGTCCTGCCAATTCGGTGTACCGTGCCAAAATCGAAGCTCCAAAAGGGGTAACGGTGAAGGTAAAGCCTTCGAAGCTCGTGTTCTCAGCGGCGACGAAGAAACAGAGCTTCGTTGTAGCAGTGTCAGCCGACAACCAGAATCTAGCACTGGGCGACGTGGGCGCTGTTTTTGGTTGGGTTTCTTGGTCGGATGGAAAGCATGTGGTCCGAAGCCCACTCGTAGTAACCCAATTAGAGCCGTTGTAA 2316 51.51 MAAYLSPLFFFFFLLIVHRFTVSADSPLKKTFIFRVDRFSKPSVFPTHYHWYTSEFAESHKILHVYDTVFHGFSATLTQQQVDSIGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGISPERRSFSDVNLGPIPRRWKGVCETGTKFTARNCNRKIVGARFFSKGHEAGSNAAGPIIGINDTIEFRSPRDADGHGTHTASTAAGRHAFQASLEGFASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGIFVSSSAGNDGPNGMSVTNLAPWVTTVGAGTIDRNFPAVVTLGNGRRISGVSLYAGAPLNGTMFPLVYPGKSGVLSVSLCMDNSLDPKVVAGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACAVGSDEGDSMKAYASSSPNPTATIAFQGTIIGIKPAPVVASFSARGPNGLNPEILKPDIIAPGVNILAAWTDAVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSAMMTTASTTDNRRQPMTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNTDYINFLCSIGYGPKMIQVITRTPVTCPAKKPLPENLNYPSIVAVFSSLSKGWSTKSFIRTVTNVGPANSVYRAKIEAPKGVTVKVKPSKLVFSAATKKQSFVVAVSADNQNLALGDVGAVFGWVSWSDGKHVVRSPLVVTQLEPL 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3717241 3719556 - Carg16178-RA Car20g00658 168517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00658 771 Pfam Fibronectin type-III domain 661 765 IPR041469 -
Car20g00658 771 Pfam PA domain 376 461 IPR003137 -
Car20g00658 771 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
Car20g00658 771 ProSiteProfiles Serine proteases, subtilase domain profile. 101 615 - -
Car20g00658 771 Pfam Subtilase family 126 587 IPR000209 GO:0006508|GO:0008236
Car20g00658 771 Pfam Peptidase inhibitor I9 46 103 IPR010259 -
Car20g00658 771 MobiDBLite consensus disorder prediction 579 598 - -
Car20g00658 771 MobiDBLite consensus disorder prediction 579 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00122 Car-Chr5:623377 Car20g00658 Car-Chr20:3717241 2.70E-179 dispersed
Car08g00711 Car-Chr8:4564134 Car20g00658 Car-Chr20:3717241 0 dispersed
Car10g00574 Car-Chr10:2899243 Car20g00658 Car-Chr20:3717241 5.49E-07 dispersed
Car16g00144 Car-Chr16:827976 Car20g00658 Car-Chr20:3717241 0 dispersed
Car17g00619 Car-Chr17:5824892 Car20g00658 Car-Chr20:3717241 0 dispersed
Car18g01109 Car-Chr18:11090735 Car20g00658 Car-Chr20:3717241 0 dispersed
Car07g00129 Car-Chr7:800002 Car20g00658 Car-Chr20:3717241 6.81E-10 transposed
Car09g00079 Car-Chr9:398345 Car20g00658 Car-Chr20:3717241 8.51E-170 transposed
Car20g00658 Car-Chr20:3717241 Car07g00646 Car-Chr7:3282729 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00658 - - csv:101217844 1422.14