Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00667 ATGGCTTTTTCCTTATTCACTTCTTTCACCCACTCCCCTCTCCGCCCATCCGTACAGCGGCGGAATCCAGCCGTGGTTGCGTCGGCGACCTCCACAGCGACGGATCGAACGACGGGGCTGCGTTTCGGCGTCGAAATGTCAATTGGGCATTCGTCGTTTTACGAGGTGCTTGGGATTCCGACGACAGCTTCTACCCGGGAGATCAAGGCGGCGTACCGGAAACTGGCGAGGATCTGTCATCCGGATGTGGTGGCGAAGAATTCGGCGGAGGAGTTTATTAAGATTCAGGCGGCGTATTCGACATTGTCGGATCCGGTTAAAAGGGCGGATTACGACAGGAAGATTTACAGAGGTCGAGTGATTTCGGTTTCGGGTACGCCGGTGTCGGGATATTCCGGTTACTACACGCGGCGGAATTGGGAATCCGACCAATGTTGGTAG 441 55.33 MAFSLFTSFTHSPLRPSVQRRNPAVVASATSTATDRTTGLRFGVEMSIGHSSFYEVLGIPTTASTREIKAAYRKLARICHPDVVAKNSAEEFIKIQAAYSTLSDPVKRADYDRKIYRGRVISVSGTPVSGYSGYYTRRNWESDQCW 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3758146 3758586 - Carg16187-RA Car20g00667 168526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00667 146 CDD DnaJ 53 104 IPR001623 -
Car20g00667 146 ProSitePatterns Nt-dnaJ domain signature. 92 111 IPR018253 -
Car20g00667 146 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 13 146 - -
Car20g00667 146 Pfam DnaJ domain 53 112 IPR001623 -
Car20g00667 146 SMART dnaj_3 51 107 IPR001623 -
Car20g00667 146 Gene3D DnaJ domain 40 127 IPR036869 -
Car20g00667 146 SUPERFAMILY Chaperone J-domain 49 130 IPR036869 -
Car20g00667 146 PRINTS DnaJ domain signature 54 72 IPR001623 -
Car20g00667 146 PRINTS DnaJ domain signature 87 107 IPR001623 -
Car20g00667 146 PRINTS DnaJ domain signature 107 126 IPR001623 -
Car20g00667 146 PANTHER - 13 146 - -
Car20g00667 146 ProSiteProfiles dnaJ domain profile. 52 115 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00667 - - - cmo:103497311 206.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01348 Car-Chr4:7804550 Car20g00667 Car-Chr20:3758146 5.61E-11 dispersed
Car08g00878 Car-Chr8:5890859 Car20g00667 Car-Chr20:3758146 4.55E-18 dispersed
Car09g00947 Car-Chr9:5830003 Car20g00667 Car-Chr20:3758146 2.21E-14 dispersed
Car20g00667 Car-Chr20:3758146 Car01g00137 Car-Chr1:693010 1.38E-14 dispersed
Car20g00667 Car-Chr20:3758146 Car03g00629 Car-Chr3:5730538 5.46E-38 wgd
Car20g00667 Car-Chr20:3758146 Car07g00372 Car-Chr7:1859106 1.10E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00667 Car_Chr20 FPKM 1.516702 1.244662 3.890615 4.941846 0.584652 1.315621 0.512211 10.46276 14.224671 13.375615