Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00677 ATGGAGGTCACCTTCTCTTCCAAGCCTCAATCACTGATGTTCAATCCATGTCTTCCTGTCAATTCTTCTTCCTCCTTCTCCTACTCTCGGCTCCGCTTCGTTCGCCGGCAATTCCTTGGCGGTGGTCATAATCTCCGCCCGCCAGATTCCTTGCGCACTCGTCGGAAGTGCAGGAAGGCTGGCTTGTTTGTTCAGTCTCCGAGGTACATTTTCCGAGCTACGTTGAGTTCGAATCCGGCTCTCATCGTTGTTGCTGTGATTACCTTCTCTGCTGTCTCGTTCATCTACATGCAACTCAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAACCTACAAAGCTTGCCTTATCTCAACTAGGTAGAGACATCAACTGGTCTGCCGATGGTGAGATAATGGGCTTTAGGGAGCACCATGGCGTCTTTTTAGAGCAGAACATAGCCATTAAGGATAGAACTGAAGAGAGAAGTTATTCTGGGGAAGGAGAGACTGTTCTGCAGCTTCAAAAATCTGTTCTGTCACATGAGGCCAGTGTCACCGAATCATTGCAGCCATCTGTTTCTGAAGTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAAAGTGAAGCGGCAGATCTTTCTCTTCTTTCTGATATATTTGAACCTAGCGTCCTCCAGCCTCTTATGTTTCCCAATGACATGACTGACTTACAACTGAACGGATCTCATGTCAAATCCCACTCCGACTTGCCTCTTCCACCTGTTGCTGGTCCTTTATATAGTGTATATAATCCAGTGACTCAACATTTCCAAGCAGATGGTGAGCCTGTAAAAGAGGAAAAATTTACCAGTTCCAACTTTCTAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGACACAGAGTCAAGTAGTCAAACGGAAACTTCTCGAACTTCTCATCTATACAACCAAAATTTTTCTTCAGTGATGATTAATGGTGTCTCGAGAGGAGCAGAATTAGTACCAGAGGATTCTCTGCACATTGCAGGGTATGTTCAAAGAAATGTACCTGTTCCATATAAGGAAGATTCTTCAGGAAACAGAAAAATATCTGGAGGCAACGACATTTCAAGATATGGGAAAGGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTGCCCTATCCAAATAGGAAGCATGTTCATTACAAAAATCTTCATGTAGATCAATTTAAATCCTACAATCAATGCCTGAAAGGTGGAAGGTTGCCCGAGTGTATCAAAATACTTCAAGACATGGAAAAAGAAGGTTTATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTTCACCATACTTATTCCAAATCCCACGTTGAGTACATTTAACATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGTAAGTTAATGTATTCTTTAATATCATTTAACTACTTCTGTCTGGAAACAATCTCAGTGGTGCATAATTTATGCATTGTAAATTTAGGCGCTTTTCAAGTCATGCGGCTTGTTCAGGAGGCTGGAATGAGAGCAGATTGCAAACTATTCACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCATCGAATGGTTAATACTGGAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTGTACGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATAACTGCATGTGGTCAGTCAGGAGCGGTGGATCGTGCTTTTGACGTGCTGGCAGAAATGGGGGCTGAGCTACATCCTATAGAGCCTGATCATATTACAATTGGTGCTTTGATCAAGGCATGTGCAAATGCTGGTCAGGTTGATCGGGCAAGAGAAGTGTATAAGATGATCCATGATTGTAAGATTAATGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAGTGTATATCAAGATATGACCGAGAATGGAGTACAACCTGATGAGATTTTTCTCAGTGCGTTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTGGCGTTAAGTGTTGGCATTGTGTCATATAGTTCGCTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAAGCGTTGGAACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCCAACTGTTTCAACTGTGAATGCACTAATAACTGCACTGTGTGATGGGAAACAACTACAAATCGCAATGGATATTCTAACTGAAATGAAGGGATTAGGACTCTACCCAAACAACATTACATACTCCATACTTACGGCAGCAAGTGAAAGGAATGACGATTTAGAAATTGCCATCATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAAGTGCATAATTGGCATGTGTTTACGAAGAACTGCAGAGCCCTCTGCCCTTGATAGATCACTTTTGTCACATGACTCTAAACTGCCTCAAGTCAATACACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCTAGCATTGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTAAAAAGCAGACTCATAGAAAACATAGGAGTATGTGCTGACTCATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCTTTTGTATCCCTCAAAGGAAGTCCTATTATTGTAGATGTCAAGGAGTTGCACATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTAATGCCAAATGAGACGACACAAGTTCTCTCTTCCAAGGGGGAGAGAACCATTAACCTTGTGGGAAGATGGTTACAGCCAAAACTCTCCAATTCTCTAAGTGGAAAACCAGGAGAGTTCAGCTCATTTCAGTCACGTCTAAGAGAAGGAATAAGCCATCAGCAGCGTAATCTTCGCACTGGGAACCTATCATTGGATTAA 3255 42.33 MEVTFSSKPQSLMFNPCLPVNSSSSFSYSRLRFVRRQFLGGGHNLRPPDSLRTRRKCRKAGLFVQSPRYIFRATLSSNPALIVVAVITFSAVSFIYMQLNRRKKNAVERSQPTKLALSQLGRDINWSADGEIMGFREHHGVFLEQNIAIKDRTEERSYSGEGETVLQLQKSVLSHEASVTESLQPSVSEVTTSKDSDSLFSDESEAADLSLLSDIFEPSVLQPLMFPNDMTDLQLNGSHVKSHSDLPLPPVAGPLYSVYNPVTQHFQADGEPVKEEKFTSSNFLIEEPAREDIYMFYEDTESSSQTETSRTSHLYNQNFSSVMINGVSRGAELVPEDSLHIAGYVQRNVPVPYKEDSSGNRKISGGNDISRYGKGKEPSLHKGKVVNGLPYPNRKHVHYKNLHVDQFKSYNQCLKGGRLPECIKILQDMEKEGLLDMNKIYHGKFFNICKSKKAVQEAFQFTILIPNPTLSTFNMLMSVCASSQDSDSKLMYSLISFNYFCLETISVVHNLCIVNLGAFQVMRLVQEAGMRADCKLFTTLISTCGKSGKVDAMFEVFHRMVNTGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALIKACANAGQVDRAREVYKMIHDCKINGTPEVYTIAVNCCSQSCDWDFASSVYQDMTENGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLALSVGIVSYSSLMGACSNAKNWQKALELYEDLKSMKLRPTVSTVNALITALCDGKQLQIAMDILTEMKGLGLYPNNITYSILTAASERNDDLEIAIMLLSQAKEDGIVPTLTMYKCIIGMCLRRTAEPSALDRSLLSHDSKLPQVNTQALMVYREIIEAGIVPSIEVLSQVLGCLQIPHDPALKSRLIENIGVCADSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIIVDVKELHIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILMPNETTQVLSSKGERTINLVGRWLQPKLSNSLSGKPGEFSSFQSRLREGISHQQRNLRTGNLSLD 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3807607 3817854 + Carg16198-RA Car20g00677 168536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00677 1084 Pfam Pentatricopeptide repeat domain 803 861 IPR002885 -
Car20g00677 1084 Pfam Pentatricopeptide repeat domain 556 616 IPR002885 -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Car20g00677 1084 MobiDBLite consensus disorder prediction 353 377 - -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 633 IPR002885 -
Car20g00677 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Car20g00677 1084 Pfam Pentacotripeptide-repeat region of PRORP 648 790 IPR033443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00677 - - - csv:101204147 1745.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00214 Car20g00677 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00677 Car-Chr20:3807607 Car09g00353 Car-Chr9:1931048 1.25E-23 dispersed
Car02g00214 Car-Chr2:1307158 Car20g00677 Car-Chr20:3807607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00677 Car_Chr20 FPKM 25.347416 28.121078 18.968151 21.791731 6.167598 5.296811 6.052787 12.915087 12.483179 13.779261