Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00695 ATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGACGCTATGGTGGAGGAAGGTGGGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTCAAGAAGATGACGATTACGAAGAGTTTGAGAAAAATAGGTTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGATTCCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCCATGTCTTTGAACCGCTCCAAACCGGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTTCCGGTCAAACCGAGGACGAAAAGGCCGAGACAATCTCGTCAAGCGAAATCCAACAGTTCTTCTCTCAACCAATCTTCGTCGTCGTCGTCCTTGTCTTCGTCCTCTGGTGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCAGCGAGAACGTGGACTATTTGAACGTCTCCGGCGAGCCAACGAAGAAGCAGAGGAAAAAGTCGTCGTCGTCGGTGACGGCGACGGCAGCGGCGGCGGTTCTTCAACCCGTAGGCCCAACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCATGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACGCTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGACTTGGCCCCAATGGTCCCGAGTTACTAA 1014 53.55 MECLEAKALKSSFHWELAMKFAQPDAMVEEGGCSNGADLVAGEDFEVDEFLNFSNGDFEHGSALRVQEDDDYEEFEKNRFSVSPYSNQSGGIPTAGEEGSKAVVAVELAIPGDALADLEWVSQFVDDSGSEYSCAAMSLNRSKPEKKLTGAVISCLPTSFPVKPRTKRPRQSRQAKSNSSSLNQSSSSSSLSSSSGVSSAAPWFIFSDASENVDYLNVSGEPTKKQRKKSSSSVTATAAAAVLQPVGPTGQIPRRCSHCHVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSY 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3976946 3978270 - Carg25951-RA Car20g00695 168554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00695 337 ProSiteProfiles GATA-type zinc finger domain profile. 254 286 IPR000679 GO:0006355|GO:0043565
Car20g00695 337 MobiDBLite consensus disorder prediction 159 196 - -
Car20g00695 337 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Car20g00695 337 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Car20g00695 337 MobiDBLite consensus disorder prediction 173 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00695 - - - cmos:111448191 618.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00231 Car20g00695 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00679 Car-Chr16:4315488 Car20g00695 Car-Chr20:3976946 5.33E-53 dispersed
Car20g00695 Car-Chr20:3976946 Car01g00085 Car-Chr1:458684 9.11E-40 dispersed
Car02g00231 Car-Chr2:1503706 Car20g00695 Car-Chr20:3976946 1.29E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5386 PF00320 GATA 6.60E-16 CL0167 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00695 Car_Chr20 FPKM 15.459662 18.253119 11.801471 10.283625 23.387552 22.227472 27.632845 13.056248 13.38081 14.874957