Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00702 ATGAAGATCCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTGTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCAAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAGGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA 648 51.7 MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTVSGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4019655 4020302 - Carg25943-RA Car20g00702 168561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00702 215 MobiDBLite consensus disorder prediction 107 126 - -
Car20g00702 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car20g00702 215 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Car20g00702 215 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Car20g00702 215 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Car20g00702 215 MobiDBLite consensus disorder prediction 106 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00390 Car-Chr16:2396513 Car20g00702 Car-Chr20:4019655 9.19E-35 dispersed
Car20g00702 Car-Chr20:4019655 Car07g00641 Car-Chr7:3251437 1.80E-16 dispersed
Car01g01519 Car-Chr1:12832885 Car20g00702 Car-Chr20:4019655 5.01E-17 wgd
Car12g00406 Car-Chr12:2587799 Car20g00702 Car-Chr20:4019655 5.89E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5387 PF00643 zf-B_box 5.50E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00702 - - bhj:120089126 264.618