Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00702 ATGAAGATCCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTGTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCAAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAGGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA 648 51.7 MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTVSGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4019655 4020302 - Carg25943-RA Car20g00702 168561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00702 215 MobiDBLite consensus disorder prediction 107 126 - -
Car20g00702 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car20g00702 215 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Car20g00702 215 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Car20g00702 215 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Car20g00702 215 MobiDBLite consensus disorder prediction 106 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00702 - - - bhj:120089126 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00390 Car-Chr16:2396513 Car20g00702 Car-Chr20:4019655 9.19E-35 dispersed
Car20g00702 Car-Chr20:4019655 Car07g00641 Car-Chr7:3251437 1.80E-16 dispersed
Car01g01519 Car-Chr1:12832885 Car20g00702 Car-Chr20:4019655 5.01E-17 wgd
Car12g00406 Car-Chr12:2587799 Car20g00702 Car-Chr20:4019655 5.89E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5387 PF00643 zf-B_box 5.50E-06 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car20g00702 Car_Chr20 FPKM 6.443137 6.213633 15.841278 12.980616 31.61598 19.911976 35.285099 9.814153 10.447577 15.115496